Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00578 ATGAAGAAGAGACAAGTGGTGGTGAAAAGAGATGTGGCAAACACTTCATCTTCAGTGATGAGAAACATAAGATATGGAGAGTGCCAGAAGAATCATGCAGCGAACATTGGAGGCTATGCTGTGGATGGCTGCAGAGAATTCATGGCTAGCACAGGGGAAGGAGCTGGTGGGGCTCTTACATGTGCAGCTTGTGGCTGCCACAGGAACTTCCACAGAAGGGAAGTGCAAACTGAGGTAGTTTGTGAGTACTCTCCTCCTAATTCTTCTCGCTAA 273 0.4762 MKKRQVVVKRDVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSSR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00578 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 87 - -
Cca03g00578 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Cca03g00578 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Cca03g00578 90 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Cca03g00578 90 PANTHER MINI ZINC FINGER PROTEIN 3 3 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00578 Cca-Chr3 9970079 9970939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00578 1 89 Zinc finger-homeobox gene family AT1G18835 75.556 3.41e-42 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca03g00578 ZF-HD_dimer 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00578 - - gmx:100785967 166.777