Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00577 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCAGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATCGGTTCCCACTAATACAGGGTTGATGAGATGCAGCAAAAGCTGTAGACTCAGATGGACTAACTATCTCCGACCTGGTATCAAACGAGGGAATTTCACTGATCATGAAGAAAAAATGATTATCCACCTCCAAGCACTTTTGGGAAACAGATGGGCTGCTATAGCTTCGTACCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAGAAAAAGTTGAAGAAGATGCAAACCGATTCTGGGAGTGGTGATGATGATGGAAACACTAATGAGAAAGAAAAGTCTTGTTTGAAGGGTCAATGGGAGAGAAGGCTTCAAACGGATATCCACATGGCCAAACAAGCCTTATGTGAGGCACTGTCCCTTGAAGAAAAACCAACCAATATTTTCCCTGATGAGACCAATCTACCCTCCACAACCACAACACCACCGAACAACCAAACACAAACACCCTTGTACGCATCAAGCACAGAAAACATAGCCAGATTGCTCCAAAACTGGATGAAGAAATCCCCAAAGACAATCTCCTTTAGCAACAACATGAACATGGTACCAACGACAGCGTCCAGTTCAAGTGAGGGAACACAGAGCAGCATCACATGCACCACACGGGATCATGCCCTTGACTCGTTGTGGAGCTTCAACGACTCTGATCGTTCTCAATCTGTGTCGGCTGAAGAAAACAACGCCAACTTGGGTGATGAGATTGAGACGCATCAAGTGCCTCTCATGCTGCTGGAGAATTGGCTCTTTGATGATGCAGCCCCTCAGTGCAATGAAGATCTTATCAACATGTCATCACTGGAGGAAAGTACAACTGGGTTGTTCTAG 960 0.451 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQTDSGSGDDDGNTNEKEKSCLKGQWERRLQTDIHMAKQALCEALSLEEKPTNIFPDETNLPSTTTTPPNNQTQTPLYASSTENIARLLQNWMKKSPKTISFSNNMNMVPTTASSSSEGTQSSITCTTRDHALDSLWSFNDSDRSQSVSAEENNANLGDEIETHQVPLMLLENWLFDDAAPQCNEDLINMSSLEESTTGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00577 319 CDD SANT 69 112 IPR001005 -
Cca03g00577 319 CDD SANT 16 61 IPR001005 -
Cca03g00577 319 MobiDBLite consensus disorder prediction 171 194 - -
Cca03g00577 319 MobiDBLite consensus disorder prediction 174 194 - -
Cca03g00577 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca03g00577 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca03g00577 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g00577 319 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 303 - -
Cca03g00577 319 Gene3D - 69 143 - -
Cca03g00577 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 303 - -
Cca03g00577 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g00577 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca03g00577 319 Gene3D - 13 66 - -
Cca03g00577 319 MobiDBLite consensus disorder prediction 118 137 - -
Cca03g00577 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca03g00577 319 SMART sant 13 63 IPR001005 -
Cca03g00577 319 SMART sant 66 114 IPR001005 -
Cca03g00577 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00577 Cca-Chr3 9902623 9904544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00577 1 298 MYB Transcription Factor Family AT5G62470 53.314 2.91e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g00577 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00577 K09422 - gmx:100807020 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00577 03 9902623 9904544 Cca03g00577 03 9902623 9904544 ECH