Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00569 ATGGAGGGAGGTGATGACTTCCAAAaccaccatcatcgtcaccaccaccaccGACAAAACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCTCCTTCTTGCTCCACCTCATCCCCATACCCCTCTCTAGCCATCTCATCAGCCGAACCCTCCAACCAACTCCTCCCCACACCCTCCGAACCCTCCCCAAAAAAGCCGCCTccaaagagaacctccaccaaagaccgccacaccaaagcggagccagcagtcatcgccgccacgggcaccggcaccatcccCGCCAACTTCACATCCCTCAACATATCTCTCCGGAGCTCGGGGTCCTCCATGTCCGTCCCCTCCCAGCTACGATCCAACTACTTCAACTCAAACTTCTCCCTCCAACCTCGTAGGAGCTTGTTCTTGGAGAACTCCAACACTTCCTCCACACTCCTCAATTTCCAATCCAACAACCCCATCTCCACCGGCATGTTCCAACCCAAGCACGAATTGCGCGAATCATCATCTCTAGACTTGTCCTCGGAGAACAACGAAGAGGGTTTGGGAAGAAAAAGGAGGCCATCTGAGCAAGACTTGTCTTCAGCTATGCAACACCAAGTTGGAAGCTATTTGATGCAATCGAGCACCTCGGGGACAATTCCGGCGAGCCACGCTCAGATTCCGGCGAATATATGGATGGTGGCGAATTCCAATAGCCAAGGTGTGAGTGGCGAGGCTCCTTTGTGGACATTCCCTGGGGTTAGTAACAACGCTTTGTATAGAGGAACCATGTCAAGTGGGTTGCATTTCATGAACTTTCCCACACCTATGACCTTGTTGCCAGGTCAGCAATTAGGGTCTTCAATTGGTGGTGGCAATATGAATGAAGGCCATTTGAGTATGCTTTCGGGGCTTAACCCTTATCGGACGGTGATCGGCGTTTCGGAGTCTCAGGCGAGTGAGTCACAGTCACATCATGGTGGAAGCGAGGATCGGCATGAATGA 996 0.4588 MEGGDDFQNHHHRHHHHRQNFPFQLLEKKEDQDPPSCSTSSPYPSLAISSAEPSNQLLPTPSEPSPKKPPPKRTSTKDRHTKAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLENSNTSSTLLNFQSNNPISTGMFQPKHELRESSSLDLSSENNEEGLGRKRRPSEQDLSSAMQHQVGSYLMQSSTSGTIPASHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNNALYRGTMSSGLHFMNFPTPMTLLPGQQLGSSIGGGNMNEGHLSMLSGLNPYRTVIGVSESQASESQSHHGGSEDRHE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00569 331 MobiDBLite consensus disorder prediction 35 58 - -
Cca03g00569 331 MobiDBLite consensus disorder prediction 1 90 - -
Cca03g00569 331 Pfam TCP family transcription factor 81 199 IPR017887 -
Cca03g00569 331 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 13 83 - -
Cca03g00569 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 82 331 IPR005333 GO:0003700
Cca03g00569 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 83 IPR005333 GO:0003700
Cca03g00569 331 MobiDBLite consensus disorder prediction 150 201 - -
Cca03g00569 331 MobiDBLite consensus disorder prediction 181 195 - -
Cca03g00569 331 MobiDBLite consensus disorder prediction 20 34 - -
Cca03g00569 331 MobiDBLite consensus disorder prediction 70 84 - -
Cca03g00569 331 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 82 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00569 Cca-Chr3 9739913 9742086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00569 56 331 TCP Transcription Factor Family AT3G47620 32.048 5.97e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca03g00569 TCP 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00569 - - gmx:100809154 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00569 03 9739913 9742086 Cca11g01948 11 44864139 44864747 ECH
Cca03g00569 03 9739913 9742086 Cca03g00569 03 9739913 9742086 ECH