Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00565 ATGGGGTCGAAGACTCTTCCTCATGTAGATGAGAAGGTCAACACGTCACAAGAAACATCAAGAAAGAGGTCTTATCCCAGTAAAAAGAAAGTCCCCAAGAGAGTTCACAAGGCTGAAAGAGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGGTCTTGCCGATGCACTTGGGGTAACAGACCTTAATGAACAGAGCAATGGAAAAGCTTCTACATTGAATGAAGCTATCAGATTGTCGAAATACTTGCTCGGTCAAATCGAGTCCCTAAAAAAGGATAATGCATCTCTGATATCTGAAACTCATTATGTGACTATGGAGAAGAATGAGGTGGTGGAGGAGAATTTTGCTCTAAAATCTCAAATTGAGAAGCTTAAAGATGAGATAAAAGCAAGAGTAGCCCAATCTAGAGCTGACTTGAATGTATCTCCTCACATGGAACTTGAGCAACTAGAAAAGACAACAAAGTTTTCAGGAGAGAGTTTCCAATTGTCTACCATAGAACCTACATTGCAACAAGGGCATGCAGTTTTGGTTGTCCCCTTAAGTCATGATCACCAAAATGCTTTATCAGCTCATAATGTTGCTGAGTTGACCCCAAAATCCACCTCCACTATCAGTAAACCGCATGCCAGGTATCCCACCCCAATGGATTCATGGCCATTAGAACTGCTTGCTAAGCAACCAACTTCAAGTTAA 705 0.4099 MGSKTLPHVDEKVNTSQETSRKRSYPSKKKVPKRVHKAEREKMKREHLNELFLGLADALGVTDLNEQSNGKASTLNEAIRLSKYLLGQIESLKKDNASLISETHYVTMEKNEVVEENFALKSQIEKLKDEIKARVAQSRADLNVSPHMELEQLEKTTKFSGESFQLSTIEPTLQQGHAVLVVPLSHDHQNALSAHNVAELTPKSTSTISKPHARYPTPMDSWPLELLAKQPTSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00565 234 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g00565 234 Gene3D - 24 102 IPR036638 GO:0046983
Cca03g00565 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 85 IPR011598 GO:0046983
Cca03g00565 234 Coils Coil 110 130 - -
Cca03g00565 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 109 IPR036638 GO:0046983
Cca03g00565 234 PANTHER TRANSCRIPTION FACTOR BHLH47 1 233 - -
Cca03g00565 234 PANTHER TRANSCRIPTION FACTOR BHLH47 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00565 Cca-Chr3 9661080 9662735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00565 10 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 43.333 5.26e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00565 - - mtr:MTR_4g108360 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00565 03 9661080 9662735 Cca11g01946 11 44836575 44839131 ECH
Cca03g00565 03 9661080 9662735 Cca03g00565 03 9661080 9662735 ECH