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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca03g00562
ATGGTCCACGTGTCCTTCTACAGAAACTATGGGAAAACATTCAAGAAGCCTCGTCGTCCGTACGAGAAGGAGCGTCTTGACGCGGAGCTGAAGCTTGTCGGAGAGTACGGGCTCCGGTGCAAGCGAGAGCTGTGGAGGGTACAGTACGCCCTCAGCCGCATCCGCAACAACGCCAGGAACCTTCTGACACTCGACGAGAAGAACCCTCGCAGGATCTTCGAGGGCGAGGCTCTGCTTCGCAGGATGTTCCGCTACGGTCTCCTCGACGAGACCCAGAACAAGCTCGATTACGTTCTCGCTCTCACCGTCGAGAACTTCCTCGAGCGCCGCCTCCAAACCCTTGTTTTCAAGTCCGGCATGGCCAAGTCCATTCACCACGCTAGGGTTCTCATCAGGCAGAGGCATATCAGGGTTGGTAGGCAAGTGGTGAACATTCCATCTTTCATGGTGAGGGTTGACTCTCAGAAGCACATTGACTTCTCGCTTACTAGTCCTCTTGGTGGTGGACGCCCCGGAAGAGTGAAGAGAAAGAACCAAAGGGCTGCTGCTAAGAAGGCTGCCGGTGGTGATGGGGATGAGGAAGATGAGGATTAG
594
0.5539
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQRAAAKKAAGGDGDEEDED
197
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca03g00562
197
MobiDBLite
consensus disorder prediction
161
197
-
-
Cca03g00562
197
Pfam
Ribosomal protein S4/S9 N-terminal domain
8
108
IPR001912
GO:0019843
Cca03g00562
197
PANTHER
30S 40S RIBOSOMAL PROTEIN
5
197
IPR022801
-
Cca03g00562
197
ProSitePatterns
Ribosomal protein S4 signature.
107
131
IPR018079
GO:0019843
Cca03g00562
197
Gene3D
-
108
165
IPR036986
GO:0003723
Cca03g00562
197
CDD
S4
109
153
-
-
Cca03g00562
197
SUPERFAMILY
Alpha-L RNA-binding motif
12
159
-
-
Cca03g00562
197
SMART
Ribosomal_S4_2
8
108
IPR001912
GO:0019843
Cca03g00562
197
TIGRFAM
uS4_arch: ribosomal protein uS4
11
166
IPR005710
GO:0003735|GO:0006412|GO:0015935
Cca03g00562
197
ProSiteProfiles
S4 RNA-binding domain profile.
109
183
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Cca03g00562
Cca-Chr3
9613408
9616359
Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca03g00562
1
187
Cytoplasmic Ribosomal Protein Gene Family
AT5G39850
91.979
4.64e-127
354
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca03g00562
K02997
-
gmx:100807649
361.688
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Cca03g00562
03
9613408
9616359
Cca11g01943
11
44820980
44822378
ECH
Cca03g00562
03
9613408
9616359
Cca03g00562
03
9613408
9616359
ECH
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