Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00560 ATGTCTAGACAGAGAAGCTCCAGAACTTTAAGGTTCACAGAGAGTGAGATTAATGATCTGATGTTGAGGCTACAAGCACTGTTGCCGCAACTAAACCAAACAAGCAACTCAAGGGCATCAATGAGCCTGATGAAGATCATCAAGGAAACTTGCTCTCACATCAATAGGCTACAGAAAGAGGTGGAAGACCTTGGTAAAAGGCTAGCAGAACTGATGGATTCTGTAGACATCAATGACATTGACCAGGAGCATCTTACAAGACTTTTGCAAGCCTAA 276 0.4275 MSRQRSSRTLRFTESEINDLMLRLQALLPQLNQTSNSRASMSLMKIIKETCSHINRLQKEVEDLGKRLAELMDSVDINDIDQEHLTRLLQA 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00560 91 Gene3D - 8 87 IPR036638 GO:0046983
Cca03g00560 91 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Cca03g00560 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 74 IPR036638 GO:0046983
Cca03g00560 91 Coils Coil 47 74 - -
Cca03g00560 91 PANTHER DNA BINDING PROTEIN 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00560 Cca-Chr3 9599900 9601077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00560 2 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 44.156 5.24e-14 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00560 - - gmx:100810266 137.502