Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00555 ATGTCTAGCAGGAGATCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTGTCCAAGTTGCAACAGCTTCTTCCAGAGATTCGTGATAGAAGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTATATCAGAAGCTTACACAGGGAAGTGGACGACCTAAGTGAACGTTTATCTGAGCTTTTGGCTACAACTGACACGGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAA 279 0.4194 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRSSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00555 92 Coils Coil 57 77 - -
Cca03g00555 92 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00555 92 Gene3D - 18 88 IPR036638 GO:0046983
Cca03g00555 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Cca03g00555 92 CDD bHLH_AtPRE_like 17 77 - -
Cca03g00555 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Cca03g00555 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Cca03g00555 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Cca03g00555 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00555 Cca-Chr3 9481936 9484357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00555 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.968 1.49e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00555 HLH 5.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00555 - - gmx:100527636 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02144 07 49418343 49420402 Cca03g00555 03 9481936 9484357 ECH
Cca09g00214 09 4633977 4636752 Cca03g00555 03 9481936 9484357 ECH
Cca06g00690 06 18983594 18984922 Cca03g00555 03 9481936 9484357 ECH
Cca03g00555 03 9481936 9484357 Cca03g00555 03 9481936 9484357 ECH