Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00551 ATGGAAAATGAACCCGCGAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTTCAGAAACGAAATGTCAAAACAAACATTCGTCTCATCATGTTCCCCTTCCTTTTGTGTCTGTTGCTGGTTCTTCTCCAAAGCGTGTTGAACAACCAATTCGACAAGGCTAAGAACAAGTGTGGCTGCATTTGTACCAGGAAACAAGGGGACACGTGTCTCGAGAAGGTGTGTGCGGTTGAGTATTCGGATTTGGACCAAGTTGGCACGTGTCCTATTGCCAGCCCTATAGAATGGCCTCCTTTGCTGCAATTGCCGGCTCCACAGTACCGTGCTGTGAGAACGGATCTTTTCCCCTTTACTGATTTTCCAAACCCCTCGTGCAGGAGGAATGGCTCTTGCCCTGTCACTATGCTCTTCACTGGCACTAACCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTGACTTCAGTTTAAACAGGTCTGATATTGTGGCTAGTTTGGCAACAAATGTCATGGGATCAGAATCAGCGCCAGAGTACACCAATTTTCTGGAATCTGCTTTCTTTTCGGATCTTCCTATTTATTATCTACAAAGTCAGTGCCCGCAGAACTCTACATTCTCCATTTCTGTTCCAATATCAGCCACTAGCAGGCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTGTGGCATAATAGTTCTTCTGAGGTGAACAATGAGCTATATAAAGGTTATCGTAGAAGTAACCCAGAGCGACAGATCAATGAGATAGCTGCAGGTTATGATTTTTTAAATTCAAATGGGAGTATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGATACAGGCTTTAATCAAATATCATTGACGCGTGTTCCTCGTTCCGTAAATTTGGTATCGAATGCCTACCTTCAGTTTCTGTTGGGACCTGGTACCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCTAAACCTGAGACCCCAATTAAGTTTGATTTGGCTTCTCTTCTGGGTGCTCTCTTCTTTACATGGGTTGTCCTGCAACTTTTCCCGATTGCCTTGACATCGCTAGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCAATATCCATTCTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAATTTCTTCAGAATGAATGACTACAGCATCCAATTCGTCTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCATTTTTATTGGCTTCCCTGTTTTCAAATGTTAAAACCGCTACAGTAATTGCATACATAGGTGTGTTTGGAAGTGGGCTATTAGGTGGCTATCTTTTCCAATTTTTTGTTCAAGACACATCATTTCCGAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCGCAATATGCCTTTAGTGGGGATGCTTTGGGGACTGATGGTATGCGCTGGGGTGATCTGAGTGATGGCACAAATGGCATGAAAGAAATCTTAATTATCATGTTCGTGGAGTGGCTACTGGTGCTTTTCTTTGCTTATTATATCGATCAAGTTTTGTCATCAGGAAGTAGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTCATTCATCTTTTCGGAAGCCTAGTATCCAAAGGCAGGGATCTAAGGTTTTTATTCAGATTGAGAAACCTGATGTCAATCAAGAGAGGGAGAAGGTGGAGCAACTACTACTTGAACCAGCTCTTAATCAAGCAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGGGAGGGATGGTAACCCCGAGAAAATTGCAGTGAGAGGGTTGTCCCTTGCTTTACCTCAAGGGGAATGCTTTGGTATGCTTGGACCCAATGGTGCTGGAAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTCACATGGATGGAATATATACCAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAATCCCTTACCGGAAGAGAGCACCTACTCTTTTATGGAAGACTTAAAAATCTCAAAGGTTCAGCCTTAACACAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGTGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTAGCAATTTCTTTGATTGGAGATCCTAGGGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCATCGAGAAAGAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTAGGAATATTTGCAGATGGTAGCTTGCAGTGCATAGGAAATCCAAAAGAGTTGAAAGCCAGGTATGGAGGAACTTATGTCTTCACGATGACAACATCCATGAACCATGAAAAAGATGTAGAGAATTTGGTGCAACAGCTCTCCCCAAATGCTAACAAGATCTACCATATCTCTGGAACCCAAAAGTTCGAGCTACCAAAGGATGAGGTTAAAATAGCAAATGTATTCCAAGCTGTTGAAACTGCAAAGAGAAGCTTCACGGTTTCAGCGTGGGGTTTAGCTGATACAACATTGGAAGATGTCTTCATTAAAGTTGCACGTGGAACTCAGGCATCTGACACCTTGTCATAA 2835 0.4152 MENEPASFWTQANALLRKNLTFQKRNVKTNIRLIMFPFLLCLLLVLLQSVLNNQFDKAKNKCGCICTRKQGDTCLEKVCAVEYSDLDQVGTCPIASPIEWPPLLQLPAPQYRAVRTDLFPFTDFPNPSCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSDFSLNRSDIVASLATNVMGSESAPEYTNFLESAFFSDLPIYYLQSQCPQNSTFSISVPISATSRQQEVTCAQGLRLWHNSSSEVNNELYKGYRRSNPERQINEIAAGYDFLNSNGSIFNVSIWYNSTYKNDTGFNQISLTRVPRSVNLVSNAYLQFLLGPGTKMLFEFVKEMPKPETPIKFDLASLLGALFFTWVVLQLFPIALTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISILYMLCFVIFGSVIGLNFFRMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGSGLLGGYLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYAFSGDALGTDGMRWGDLSDGTNGMKEILIIMFVEWLLVLFFAYYIDQVLSSGSRKSPLFFLKGFQKKPHSSFRKPSIQRQGSKVFIQIEKPDVNQEREKVEQLLLEPALNQAIVCDNLRKVYPGRDGNPEKIAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFYGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSLQCIGNPKELKARYGGTYVFTMTTSMNHEKDVENLVQQLSPNANKIYHISGTQKFELPKDEVKIANVFQAVETAKRSFTVSAWGLADTTLEDVFIKVARGTQASDTLS 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00551 944 SMART AAA_5 652 835 IPR003593 -
Cca03g00551 944 Pfam ABC-2 family transporter protein 342 552 - -
Cca03g00551 944 Gene3D - 615 888 IPR027417 -
Cca03g00551 944 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 859 IPR003439 GO:0005524
Cca03g00551 944 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 944 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca03g00551 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 863 IPR027417 -
Cca03g00551 944 Pfam ABC transporter 644 788 IPR003439 GO:0005524
Cca03g00551 944 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 5 944 - -
Cca03g00551 944 CDD ABC_subfamily_A 626 847 - -
Cca03g00551 944 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00551 Cca-Chr3 9413028 9423894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00551 598 870 Calmodulin-binding Proteins AT2G36910 22.727 7.29e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00551 - - gmx:100805474 1713.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00551 03 9413028 9423894 Cca03g00551 03 9413028 9423894 ECH