Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00550 ATGATTCCGattcagattcaaattcaaattcaaattcaaattcaaatGATTATGACTGTTGCGCGCGTGTTTGTGTGTGTGCAGGTGAAGTCCTTTAGGGACAAGAGTGAAGTGGATGCGTGGCTTCTCGATAACCCTATGCGTTGTCCAGGGGCTCTTCATTTCGCGGAGAGAAACGACACCGTTATAAGCTACGGCCTTCAGACGAATTCCACTAGTCTTCCGCTGCGAGGGAAGTACGAGGACCCTACTTTTTCGTTCCAGCTCCCTCTTCAGCTTGCCGCTGAGCGTGAAATTGCCAGATACCTTATTGGAGATGTGGGATTCAGTTGGAATGTGTTTCTGAGGGAATTCGCGCACCCTAGCATGAGTCCTTTCTCTGCCGTGGGATCAACGGGTCCCGCCTTTTTCCTTGCCATCGCCATGTTTAATTTTGTTCTTCAGATGAGCTCTTTGGTGACGGAGAAAGAGCTTAAACTTCGTCAGGCAATGAATATGATGGGCCTTTATGACTTTGCTTACTGGTTTTCCTGGCTCATTTGGGAGGCAGTTGTCACAATCCTATCGTCTCTACTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCAATTTTTCTTGAAAAACAGTTTTTTGGTCCTGTTCTTTTTGTTCTTCCTATTTGAACTTAACATGACTGGCTTGGCCTTCATGTTATCTTCTTTCATTCAGAAATCATCTTCGGCAACAACAGTGGGCTTCTGTATATTTATTGTGGGCTTTTTGACTCAGATTGTGGTACAAGGAGGATTTCCTTATAAACATAGCTTCTCCAGTACTATACGAAACGTGTGGTCGTTATTCCCACCTAATCCTTTTGCTCAAGGCATACAAGTGCTTTCAGATGCTGTTGCAACATCTGAAGACAATGGTGTTAGCTGGAGTAAACGAGGAGAATGTCCCCTTACTGATGACGACTGTGTGATAACTATTGATGATATTTATAAATGGCTTGCGGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCCAATGCATCGGGTGTTAGGAAATCAATATTGTACTTTCTAAGTCCCAGCTATTGGACGGGAAGAGGAGGTCAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGTGTAGGTTCAACCCTACGTCAAGAACAAGGTACACCAGATGATGAAGATGTACTTGAAGAAGAAAACAAAGTTAAGCAGCAACTAAGAGAAGGTCTGGTTGATGCAAATGTTGCTGTTCAGTTACATGGCCTTGCAAAGACATATCCTGGTACACTTAACTTTGGTTGCTGCTGTAAATGTAAAAGAAGTTCTGCTTACAATGCTGTCAAGGGTTTGTGGGTGAACTTTGCCAAGGATCAGTTATTTTGTCTGCTAGGACCCAATGGAGCTGGAAAAACTACAGCCATTAATTGTTTGACAGGGATAACTCCGGTAACTGATGGAGATGCATTGATTTATGGACATTCAATCAGAAGCTCTACTGGCATGTCAAACATTCGAAAGCTTATTGGAGTATGTCCACAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGACCCCAGCTTCCATAAAATCAATTACCCAGAGTTCATTAGCAGAGGTGAGACTCACCGATGCAGCCAAAGTGAGAGCTGGAAGTTATAGTGGAGGAATGAAACGTCGTCTAAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTATTCTTACAACGCACTCTATGGAAGAAGCCGACATTCTAAGTGACCGCATAGGAATCATGGCTAAAGGAAGGCTTCGTTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGATTTATTGCTAATATCAGCTTCTATGGAAACAATATTGAACGTAGTCCTGCCAATGGAGATGCAATATCTACAGAACATCGTGAGATTGTGAAGAAATTCTTTAAGAATCGTTTAGACGTAGTGCCAAAAGAGGAGAACAATAACTTTCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCTTGAAGGTAAGCTTTCTTTTTTTGGTTGCATCCATTTCATTTAAATCTTCTCTAACACAGGGTTTAAATTTTGACTGTTGTTTAAATATTGATTGA 2265 0.4159 MIPIQIQIQIQIQIQMIMTVARVFVCVQVKSFRDKSEVDAWLLDNPMRCPGALHFAERNDTVISYGLQTNSTSLPLRGKYEDPTFSFQLPLQLAAEREIARYLIGDVGFSWNVFLREFAHPSMSPFSAVGSTGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMNMMGLYDFAYWFSWLIWEAVVTILSSLLIVLFGMMFQFQFFLKNSFLVLFFLFFLFELNMTGLAFMLSSFIQKSSSATTVGFCIFIVGFLTQIVVQGGFPYKHSFSSTIRNVWSLFPPNPFAQGIQVLSDAVATSEDNGVSWSKRGECPLTDDDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSILYFLSPSYWTGRGGQKVKEGGVCSCVGSTLRQEQGTPDDEDVLEEENKVKQQLREGLVDANVAVQLHGLAKTYPGTLNFGCCCKCKRSSAYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLTPASIKSITQSSLAEVRLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNIERSPANGDAISTEHREIVKKFFKNRLDVVPKEENNNFLTFVIPHDREALLKVSFLFLVASISFKSSLTQGLNFDCCLNID 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00550 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 650 IPR027417 -
Cca03g00550 754 SMART AAA_5 461 645 IPR003593 -
Cca03g00550 754 Pfam ABC-2 family transporter protein 123 343 - -
Cca03g00550 754 Gene3D - 412 666 IPR027417 -
Cca03g00550 754 CDD ABC_subfamily_A 422 656 - -
Cca03g00550 754 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 28 724 - -
Cca03g00550 754 Pfam ABC transporter 455 597 IPR003439 GO:0005524
Cca03g00550 754 ProSitePatterns ABC transporters family signature. 570 584 IPR017871 GO:0005524
Cca03g00550 754 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 28 724 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cca03g00550 754 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 668 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00550 Cca-Chr3 9383246 9391514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00550 463 667 Calmodulin-binding Proteins AT2G36910 23.256 1.31e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00550 - - ccaj:109790891 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00550 03 9383246 9391514 Cca03g00550 03 9383246 9391514 ECH