Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00549 ATGGGGAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGTAAAAAGTCATCCAAATCAAATATTTCTAAAGGAAGAGAGAAGCTTGTTAATAAAAAAGAAGTGTTCGCTACCAATGTGTTGGAAAATGGTTTGGCCTTAGATCCAACTCCTAATGAGATTGCTACAAATGAGGACGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGGAAATCAAGAAAGAGACATTATGGGATCTGTTGACCCAGATGCACCACTTGATCCAGAGAAAATTAGGCAGGAGGAAGCAGCAACGAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAAGGCCTTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATCTTGTATGTATGGGATTGTAAAGTTGCAAGCACTTGTCCGTGGAGTAAGGATCAGGCAGTCTAATGTAGGAATTGAAATCCATGAGAAGCGCAATCTATTTAAGCCTCAGGATGGCAAACTTGGTGAGCCAATTGGTATTTCCACAAAAATTTCAAAGCTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAACTACAATAATGGCACTGCGCCTGCAATATGTTAGTCGAGATCCAAATTCAGTCTTAAGCTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGAGACCAAACCTCAGAGAAAGCAGAGTAATATTTCAAATGGAGAAGCTCATATTACCAAATCAAAACGCACTAACCGGAAGCTTCCTATTGCAAATTTTGAACCAGTCCCAGTGCAAACAAATCCTGAATTTGAGAAACCAAAACGTAATTTCAGGAAAATACCATACCAGGTGTCTGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTATTCAGCCAGAAGTTGAATGTGAGACCCCAAAGCAGCATTTGGAAATAGAAACAGTTATTCCAAGGCATGTTGTTTCAGAACAAGTGGTCATTACTTCTGATGAAAAGATCAAGAAGGAATCAACCTTGACCATCTCCAATGTGCCTGATGTTGAAATTACTCCAAGACCATCAGCTAACAAGGAAGCTTCTGACATTACGAAAAGTTATCTGGTGTCTGTAGAATCAAAGACCTTGGCAGAGACTACAACTATAGATAGAAATATGTCTCATGACGAAGTTAAAAATGAGCTGGGAAATCTATCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTCATTCATAAAGAAGAGCTAACTGGTAATGAAAGCCAGAAACCTACCCGTAAAGCCTCGAATTTGGCAAAGCTGGAGAATGGAGAAGATGGCTTTAAGAATAGTCCAAAAGTACCAAGTTATATGGCTGCAACTGAATCTGCCAAGGCTAAGTTGAGGGCTCAAGGATCCCCAAGGTTTGGACAAGATGAAATTGAGAGAAACAGCGCTACTGGAGCTGGGAGACAGTATCAGCCTTCTTCAACTAACAAGAAGATTAGTTCGCATTCACCTAAGACCCAAAAATCAGTTCAATCAGGTGGCAGAGGGAGCAACAAAAGTGACAAAACACTACCATCTTCTAAAGGAGGGAATGGGAAGATAATTCAAGCAGAGTGGAGAAGGTGA 1758 0.4044 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKKEVFATNVLENGLALDPTPNEIATNEDDHELENEESENILPGNQERDIMGSVDPDAPLDPEKIRQEEAATKAQAAFRGYLARRAFKALKGIIRLQALIRGHLVRRQAVVTLSCMYGIVKLQALVRGVRIRQSNVGIEIHEKRNLFKPQDGKLGEPIGISTKISKLSANTFIRKLLASSTTIMALRLQYVSRDPNSVLSWLERWSASYFWKPVPQPKKIRETKPQRKQSNISNGEAHITKSKRTNRKLPIANFEPVPVQTNPEFEKPKRNFRKIPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAIQPEVECETPKQHLEIETVIPRHVVSEQVVITSDEKIKKESTLTISNVPDVEITPRPSANKEASDITKSYLVSVESKTLAETTTIDRNMSHDEVKNELGNLSETIFKDENSLLTNGDFIHKEELTGNESQKPTRKASNLAKLENGEDGFKNSPKVPSYMAATESAKAKLRAQGSPRFGQDEIERNSATGAGRQYQPSSTNKKISSHSPKTQKSVQSGGRGSNKSDKTLPSSKGGNGKIIQAEWRR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00549 585 Gene3D - 95 146 - -
Cca03g00549 585 PANTHER IQ-DOMAIN 5-RELATED 1 574 - -
Cca03g00549 585 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Cca03g00549 585 MobiDBLite consensus disorder prediction 526 574 - -
Cca03g00549 585 PANTHER PROTEIN IQ-DOMAIN 31 1 574 - -
Cca03g00549 585 MobiDBLite consensus disorder prediction 48 92 - -
Cca03g00549 585 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Cca03g00549 585 SMART iq_5 120 141 IPR000048 GO:0005515
Cca03g00549 585 SMART iq_5 97 119 IPR000048 GO:0005515
Cca03g00549 585 MobiDBLite consensus disorder prediction 250 276 - -
Cca03g00549 585 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Cca03g00549 585 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Cca03g00549 585 Pfam Protein of unknown function (DUF4005) 484 564 IPR025064 -
Cca03g00549 585 MobiDBLite consensus disorder prediction 463 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00549 Cca-Chr3 9371093 9377709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00549 1 585 IQD Protein Family AT1G74690 44.426 6.51e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00549 - - gmx:100786022 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00549 03 9371093 9377709 Cca11g01937 11 44736880 44745884 ECH
Cca06g00699 06 19169078 19174932 Cca03g00549 03 9371093 9377709 ECH
Cca03g00549 03 9371093 9377709 Cca03g00549 03 9371093 9377709 ECH