Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00548 ATGGAGTTTGGTTCGGAAATATCTGGTCATGAAGTCAAGGACGAGAAGAGAAGTGAATCCAGTATTGGCGATGAAGAAGATCGTCGTGAACAAGAGATTGTTATGCAGGAGCCACCCCTCACTACTATCGAAAGATCTACCGTTGAGGCTGGACCAAATGCATCCCCGACCAAAAAGGAAGAGGTTGACGAACTTGAAACTGCGAAAGCCGAAATGGGTGAAGTGATACAAGAAAATCAACGACTAAAGATGAGTCTGAACCGAATATTAAATGATTACCGTACACTGCAAATGCAATTCCACAGCATAGTTGAACAAGAGACAAAAGATTCTTCTGACAAAGTGAAAAATAATGATCATCAAGAAACAATAATAGAGGAATCAGATCTAGTTTCCCTCAGTCTTGGAAGACTTCCAAGAAGCAATGAGAAAGCTAAAGCCTCTAAACCTTTGAAAGATGAAGAAGATAAAGAAGGCTTGTCTCTTGGACTGGATTGCAAATTTGAAACATCGAAATCTGGAAGCAGCACTGAACATATGCCAAATGCAAGCCCTGATAATAGTGTTGAAGCACCGAAGGAAGAAGCTGGTGGGGAGAGTCCACCTAAGAAGGGACACAAGACAAATAGAGATGCCGGAGAGGATGAAGTTTCTCAGCAAAACCCTACAAAGAAAGCAAGAGTTTGTGTCAGAGCAAGATGTGACACCCCAACTTTGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCCGTAAGAAAGCAGGTGCAAAGATGTTCACAAGACATGTCCATACTAATCACAACCTACGAAGGTAACCACAACCACCCTCTTCCTCTTTCAGCTACTGCCATGGCTTCCACCACTTCTGCAGCAGCTTCCATGCTATTATCCGGCTCATCAACCTCACACTCTGGATCAAGACCATCCACTTCTGCAGATCTTCATGGCATGAACTTCTTCCTATCAGATGGTTCCAAATCAAAGCAATACTACCTCTCCCATCCTGCACTCTCATCTTCACCTTCACACCCTACCATCACTCTTGATCTCACGTCTAATCCACCCTCTTCTTCACCACCCTTTGTTAAATTCACTTCAAACTCAAACTACAACTCACAAAGGTACCCTTCCACGAGCCTCAACTTCGGTTCAAACGAGTCCAATGCTACATCTTGGACCAATAACGGGTTCCTCAGCTacaccacacaacaacaacaaccatataataacaataggaacaaTGTGAATTTCCTTAGCAACATAAACCTTGGAAGacaacaacaacaacaaccacagccaatggagaacatcctcaactcctacatgcaaaggaacaacaacaacaacaaTATTCCAATCCCTCCACCACAACATTCTCTGCCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCTAATTTTCAGTCAGCTTTGGCAGCAGCACTTACAACAATTATTGGCTCAGGAAGCACTAACCAAGGTGCTGTGGAAAATAATCTGACTCAGAAAATGAAATGGGGTGAGTTGTTTCCATCATCTTCTGCATTACCTTCGTCTTCTAAAGTGAGTGGCTGTGCATCAAGCTTCTTGAACAAATCACCCGCTAGTACACAGGCAGCAAGTTTGATGTTTCTTCAGCCACCTTTGCCACTTTCTAGCCCCAGAAGCGCTTCTGGGTCTCCCGGAGATAACAGAGACAAGAAAAATTAG 1785 0.4095 MEFGSEISGHEVKDEKRSESSIGDEEDRREQEIVMQEPPLTTIERSTVEAGPNASPTKKEEVDELETAKAEMGEVIQENQRLKMSLNRILNDYRTLQMQFHSIVEQETKDSSDKVKNNDHQETIIEESDLVSLSLGRLPRSNEKAKASKPLKDEEDKEGLSLGLDCKFETSKSGSSTEHMPNASPDNSVEAPKEEAGGESPPKKGHKTNRDAGEDEVSQQNPTKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCSQDMSILITTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGSRPSTSADLHGMNFFLSDGSKSKQYYLSHPALSSSPSHPTITLDLTSNPPSSSPPFVKFTSNSNYNSQRYPSTSLNFGSNESNATSWTNNGFLSYTTQQQQPYNNNRNNVNFLSNINLGRQQQQQPQPMENILNSYMQRNNNNNNIPIPPPQHSLPDTIAAATKVITADPNFQSALAAALTTIIGSGSTNQGAVENNLTQKMKWGELFPSSSALPSSSKVSGCASSFLNKSPASTQAASLMFLQPPLPLSSPRSASGSPGDNRDKKN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00548 594 MobiDBLite consensus disorder prediction 168 184 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 106 126 - -
Cca03g00548 594 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00548 594 Pfam WRKY DNA -binding domain 240 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00548 594 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00548 594 Gene3D WRKY domain 224 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00548 594 MobiDBLite consensus disorder prediction 192 221 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 142 163 - -
Cca03g00548 594 Coils Coil 58 85 - -
Cca03g00548 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 590 IPR044810 GO:0003700
Cca03g00548 594 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 23 590 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 104 225 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 1 34 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 566 594 - -
Cca03g00548 594 MobiDBLite consensus disorder prediction 1 61 - -
Cca03g00548 594 SUPERFAMILY WRKY DNA-binding domain 232 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00548 Cca-Chr3 9296910 9301564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00548 72 527 WRKY Transcription Factor Family AT5G15130 41.365 1.13e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00548 WRKY 7.9e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00548 03 9296910 9301564 Cca11g01930 11 44650725 44655503 ECH
Cca07g02129 07 49141645 49144930 Cca03g00548 03 9296910 9301564 ECH
Cca09g00205 09 4300531 4303643 Cca03g00548 03 9296910 9301564 ECH
Cca06g00704 06 19209173 19216232 Cca03g00548 03 9296910 9301564 ECH
Cca03g00548 03 9296910 9301564 Cca03g00548 03 9296910 9301564 ECH