Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00547 ATGGAAGCTAGCAAGTTGATGACATTGTTGTTCTTTTATGTATTTTATTTTGCCATATTCCCTACCGTGAAGGCTAACATAGGTCACATGGACCATGTCTGGCATAAGCGATTGTTGGAAGCAAGGGAAGCTGCAAAGCAGGCTTATCATCCAGATCCCATGAAAGTCACCGAGGAATTCAATGCACACGTCATTAGAGCTGTGGAAGGGTCGAATAGCACAAGAAGAGGGTTAAAATACAGTGGTCCATGCAAGGCTACAAATCCCATTGACCAATGTTGGAGATGTGACCCAGATTGGGAGAAAAACCGCAAGAAGCTTGCAGATTGTGTTTTAGGATTTGGCCACGGCACAACGGGAGGAAAAGATGGCAAAATTTACGTGGTAAGCGACAATTCCGACGATGACCTCGTGAACCCTAAACCAGGGACATTGAGACACGCCGCGATTCAGAAAGAGCCATTGTGGATCATTTTTTCCAAAAACATGAAAATCAAGCTTAAGGCTGAGCTCATGTTGACGGATAACAAGACCATAGATTCACGCGGCGCCAACGTTCACATATGCAACGGTGCCCAAATAACGTTGCAGTATGTGAATAATATCATCATTCATGGCCTGCATGTTCACGACATCAAGAGATGCAGCGGTGGCCTCATAAGAGACTCCATGAGTCACTATGGAATCCGCGCCATGAGCGATGGTGATGGGATTTCGATTTTCGGAGCCACGCGTATTTGGATCGATCATGTTTCCATGACCAATTGCGACGATGGCCTCATTGATGTCGTTAGTGCTTCCACGGCTGTTACTATCTCCAATTGCCATTTCACCAGACACAATGATGTTTTGTTATTTGGTGCAACTGATAGCTTCACTGGTGATAAAGTGATGCAAGTGACTTTGGCTTTCAACCATTTCGGGAGAGGATTGGTTCAGAGGATGCCGAGGTGCAGGTGGGGCTTCGTTCATATTGTAAACAATGACTACACTCATTGGCTAATGTATGCAATTGGTGGAAGCCAACAACCCACCATCATCAGCCAGGGCAACCGATTTGTCGCTCCAAATAACCAAGCTGCAAAAGAAGTGACAAAAAGAGAATATGCACCAGAAAGTGAGTGGAAATCATGGGATTGGAGATCAGAAGGTGATTTATTGATGAATGGAGCCTTCTTTATTGAGTCTGGGAAGAAAGTCACGAATGCTCCCAAGACAGACCTCAAAGCAATGCCTGCAAAAAGCGTAGCGGATCTCACTCGCTTTGCAGGTCCTATAAAATGTCAAGTGAACAAGCCGTGCTGA 1305 0.4529 MEASKLMTLLFFYVFYFAIFPTVKANIGHMDHVWHKRLLEAREAAKQAYHPDPMKVTEEFNAHVIRAVEGSNSTRRGLKYSGPCKATNPIDQCWRCDPDWEKNRKKLADCVLGFGHGTTGGKDGKIYVVSDNSDDDLVNPKPGTLRHAAIQKEPLWIIFSKNMKIKLKAELMLTDNKTIDSRGANVHICNGAQITLQYVNNIIIHGLHVHDIKRCSGGLIRDSMSHYGIRAMSDGDGISIFGATRIWIDHVSMTNCDDGLIDVVSASTAVTISNCHFTRHNDVLLFGATDSFTGDKVMQVTLAFNHFGRGLVQRMPRCRWGFVHIVNNDYTHWLMYAIGGSQQPTIISQGNRFVAPNNQAAKEVTKREYAPESEWKSWDWRSEGDLLMNGAFFIESGKKVTNAPKTDLKAMPAKSVADLTRFAGPIKCQVNKPC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00547 434 Pfam Pectate lyase 169 353 IPR002022 -
Cca03g00547 434 Gene3D - 87 427 IPR012334 -
Cca03g00547 434 PANTHER PECTATE LYASE 6 434 - -
Cca03g00547 434 SUPERFAMILY Pectin lyase-like 88 417 IPR011050 -
Cca03g00547 434 SMART amb_all 162 359 IPR002022 -
Cca03g00547 434 Pfam Pectate lyase, N terminus 26 78 IPR007524 GO:0030570
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Cca03g00547 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Cca03g00547 434 PANTHER PECTATE LYASE 18-RELATED 6 434 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00547 Cca-Chr3 9261970 9264192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00547 1 434 Polysaccharide Lyase AT3G01270 54.202 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00547 K01728 - gmx:100801864 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02120 07 49054634 49056832 Cca03g00547 03 9261970 9264192 ECH
Cca09g00198 09 4097597 4100129 Cca03g00547 03 9261970 9264192 ECH
Cca03g00547 03 9261970 9264192 Cca03g00547 03 9261970 9264192 ECH