Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00541 ATGAAAATGGGTCATGTAGTGTGGATGTTGCTGGTGATTTCCACCACTGTTTTATGCCCTTCTTCTCATGCTCTAACTCAAGATGGATTGACATTGTTGGAGATCAAAAGCGCTTTGAATGACACAAGGAATTTTCTGAGAAACTGGCGAGAATCTGATGAGTCTCACTGTACATGGACTGGTATCACTTGTCATCCTGGGGAACAACGAGTTCGCTCAATAAATCTACCTTACATGCAACTGGGGGGAATTATATCTCCTAGCATTGGCAAACTCAATAGACTGCATAGACTGGCACTTCATCAAAATGGCTTAAATGGAGTTATTCCCAGTGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGAGCTAATTATTTACAAGGAGGCATCCCATCAGATATTGGAAATCTTTCTTATTTACATGTAATGGATTTATCGAGCAACTCATTGAAGGGTGCTATACCTTCTTCTATAGGCCGTCTTTCACAATTGCGAGTTCTGAACTTGTCAACTAATTTCTTTTCCGGTGAAATCCCTGACATTGGAGTGCTAAGCACCTTTGGGAACAACGCGTTTATTGGGAATTTAGATCTTTGTGGGAGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTCCCAGTGGTGCTACCACATGCTGAAAGTGATGAAGCTGCAGTCCCTGCCAAAAGATCTTCACACTACGTGAAGTGGCTGCTAGTTGGTGCAATATCAATTATGGGTCTTGCACTTGTAGTAACTCTTTCATTACTATGGATTTGTTTGCTATCAAAGAAGGAAAGAGCTGCTAGGAGATACGTAGAAGTTAAGGATCAAGTCAATTCAGAATCTAGCAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGTTGGAATCTCTCGATGAAGATGACGTGGTAGGGTCTGGAGGATTTGGTACTGTTTACCGGATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGATAGAAGTCGTGAAGGTTCTGATCGAGGGTTTGAAAGAGAACTAGAAATATTGGGTAGCATCAAGCACATTAATCTAGTTAACCTGCGTGGTTACTGCAGACTCCCTTCTACTAAGCTTCTAATCTATGATTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAAAGCCGAACAATCACTGAACTGGAGTACTCGCCTAAAGATAGCCCTTGGATCTGCTCGGGGTTTGGCTTACTTGCACCATGACTGTAGCCCAAAAATTGTGCATCGTGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCTAAGCTTTTGGTAGATGATGATGCTCATGTTACGACAGTGGTGGCTGGCACATTTGGTTATTTGGCACCAGAGTATTTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTACTGCTAGAACTTGTAACTGGAAAGAGACCTACAGATCCTTCCTTTGCAAGGAGAGGTGTAAATGTTGTTGGTTGGATGAACACGTTCCTAAGAGAAAATAAATTGGTAGACGTAGTAGACAAAAAATGCACCGATGCAGATTGGGAATCTGTTGAAGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTATTGCAGATACTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCACATTCAGATCATTAA 1815 0.4165 MKMGHVVWMLLVISTTVLCPSSHALTQDGLTLLEIKSALNDTRNFLRNWRESDESHCTWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLNRLHRLALHQNGLNGVIPSEISNCTELRALYLRANYLQGGIPSDIGNLSYLHVMDLSSNSLKGAIPSSIGRLSQLRVLNLSTNFFSGEIPDIGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSSHYVKWLLVGAISIMGLALVVTLSLLWICLLSKKERAARRYVEVKDQVNSESSRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDRGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHEKAEQSLNWSTRLKIALGSARGLAYLHHDCSPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFLRENKLVDVVDKKCTDADWESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00541 604 ProSiteProfiles Protein kinase domain profile. 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00541 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cca03g00541 604 PANTHER LRR RECEPTOR-LIKE KINASE 2 604 - -
Cca03g00541 604 PANTHER RECEPTOR-LIKE PROTEIN 55 2 604 - -
Cca03g00541 604 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Cca03g00541 604 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cca03g00541 604 Pfam Protein kinase domain 320 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00541 604 Gene3D Transferase(Phosphotransferase) domain 1 393 594 - -
Cca03g00541 604 Gene3D Phosphorylase Kinase; domain 1 278 392 - -
Cca03g00541 604 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00541 604 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Cca03g00541 604 SUPERFAMILY Protein kinase-like (PK-like) 295 586 IPR011009 -
Cca03g00541 604 SUPERFAMILY L domain-like 25 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00541 Cca-Chr3 9134039 9139141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00541 8 594 Receptor kinase-like Gene Family AT2G35620 49.406 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Cca03g00541 Pkinase 8.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00541 - - gmx:100805042 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00541 03 9134039 9139141 Cca03g00541 03 9134039 9139141 ECH