Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00538 ATGGGCATGGATTACTACAACATACTGAAAGTGAATCGCAACGCCAGCGACGACGATTTGAAGAAGGCTTACAAGAGGCTGGCTCGCATATGGCACCCTGACAAGAACCCCGACAACAAGACCGAAGCCGAGGCCAAATTCAAACGAATCTCCGAAGCCTACGACGTCCTCAGCGACCCTCAGAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCGCTCAAGTCCGGCCAGGTCccgccgccgccgcactcctcctcctcctcctcctcccgcgccttccaccaccaccgccACAACCCCCCGCCGTCCTTCCGCTTCAACCCGCGCGACGCTGACGACATCTACGCCGAGTTTTTCGGCCCCGACGAcgccgccgcctccgcctccgcctccgcctccTCCCGCCGCGACGCCTTCTTCCGGACCTCCAACGCGTTTGGCGGCGGCGGCGCCAGGAAGGCCGCCGCGGTGGAGAATACGCTCCCGTGCAGCTTGGAGGAGCTCTACAAAGGCGTCAAGAAGAAGATGAAGATCTCCAGGAACGTCTTCGATGCTTTTGGCAAATCTCGGAATGTGGAGGAGATTTTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGAGCCTGGTGTCATCCCAGCAGATCTTATTTTTGTGGTAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGCAATGATTTGGTGATCAATCAGGAGATAACCCTTCTTGAGGCCCTTACAGGTAAAACGTTGGATCTCATCACCTTGGATGGAAGGAGTCTCATGATCCCGTTGACAGATATTGTCAAACCAGGTGCTGAGGTTGTTGTCTCTAATGAAGGAATGCCAATATCGAAAGAGCCTGGGAGGAAGGGGAATTTGAGAATCAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTGCAGAGCAGAAGTCTGATCTGAGGAGAGTTTTAGGTGGAATCTCATAA 1008 0.4722 MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPDNKTEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQVPPPPHSSSSSSSRAFHHHRHNPPPSFRFNPRDADDIYAEFFGPDDAAASASASASSRRDAFFRTSNAFGGGGARKAAAVENTLPCSLEELYKGVKKKMKISRNVFDAFGKSRNVEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADLIFVVDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLITLDGRSLMIPLTDIVKPGAEVVVSNEGMPISKEPGRKGNLRIKLDVKYPSRLTAEQKSDLRRVLGGIS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00538 335 Gene3D - 237 317 - -
Cca03g00538 335 PANTHER BNAA06G20720D PROTEIN 2 334 - -
Cca03g00538 335 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cca03g00538 335 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 334 - -
Cca03g00538 335 CDD DnaJ 4 59 IPR001623 -
Cca03g00538 335 CDD DnaJ_C 158 319 - -
Cca03g00538 335 SUPERFAMILY HSP40/DnaJ peptide-binding domain 240 325 IPR008971 GO:0006457|GO:0051082
Cca03g00538 335 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 237 IPR008971 GO:0006457|GO:0051082
Cca03g00538 335 MobiDBLite consensus disorder prediction 74 109 - -
Cca03g00538 335 Pfam DnaJ C terminal domain 159 316 IPR002939 -
Cca03g00538 335 SUPERFAMILY Chaperone J-domain 3 85 IPR036869 -
Cca03g00538 335 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cca03g00538 335 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cca03g00538 335 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cca03g00538 335 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cca03g00538 335 SMART dnaj_3 3 62 IPR001623 -
Cca03g00538 335 Gene3D - 156 235 - -
Cca03g00538 335 Gene3D DnaJ domain 2 133 IPR036869 -
Cca03g00538 335 Pfam DnaJ domain 4 67 IPR001623 -
Cca03g00538 335 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00538 Cca-Chr3 9053536 9058845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00538 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 4.56e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00538 K09510 - gmx:100781572 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00538 03 9053536 9058845 Cca03g00538 03 9053536 9058845 ECH