Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00537 ATGGGGAACTGCAACACGTGCGTGAAATCTGACGTGGTGGAGAGCAAGAGGGACAAgaagccgaacccgaacccgaaaaaaccgaacccgTTTTCGGAAGAAGCGGGTCGGTCCTCGGCGGCTCCGATCCGCGTTTTGAAGGACGTGATTCCAATGAGCCACCGGAGCCGCATAAGCGACAAGTACATATTGGGCCGGGAATTGGGCCGGGGCGAGTTCGGCATAACGTACCTGTGCACGGACCGGGAGACGAAGGAGGCGCTGGCGTGCAAGTCCATCTCCAAGCGGAAGCTGAGGACCGCCGTCGACGTGGAGGACGTGCGCCGCGAGGTGGCCATCATGTCCACCCTGCCGGAGCACCCCAACGTCGTCAAGCTCAAGGCGACCTACGAGGACAACGAGAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTTTTCGACCGGATTGTCGCCAGGGGACACTACAGCGAGCGCGCCGCCGCCGGAGTGGCGCGCACCATCGCCGAGGTCGTTAGGATGTGCCACACCAATGGCGTCATGCATAGGGACCTCAAGCCGGAGAACTTTCTGTTCGCCAATAAGAAAGAGAATTCACCTCTCAAGGCCATTGATTTTGGTCTCTCCGTCTTCTTCAAGCCAGGGGAAAAATTTTCGGAGATTGTTGGGAGTCCTTACTATATGGCTCCGGAGGTTTTGAAGCGGAATTATGGACCAGAAGTTGATGTGTGGAGTGCTGGAGTGATTCTTTATATTTTGCTGTGTGGGGTTCCTCCGTTTTGGGCAGAGACCGAACAAGGTGTGGCGTTGGCGATCTTGAGGGGTGTGATTGACTTCAAGAGGGAACCTTGGCCGCAAATATCGGAGAGTGCTAAGAATCTTGTGAAGGGAATGTTGGAGCCGGATCCTAAAAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGCTGCAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAGGCAGTTTTCTGTGATGAATAGATTCAAAAAGAGAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACTTATGAGGAACTGAAGGCTGGGTTGAGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGACGGAAATGGTGTACTTGACTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGAAGTGGATATATTGAGTTAGGCGAGCTACAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAATTTGTGGCCATGATGAAAACTGGAACCGATTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAGGATGGCTCGCTTCAGCTTCATGATGGAATTACTGGTCAAGCTGTGGTGGTTTGA 1635 0.4881 MGNCNTCVKSDVVESKRDKKPNPNPKKPNPFSEEAGRSSAAPIRVLKDVIPMSHRSRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDVEDVRREVAIMSTLPEHPNVVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAGVARTIAEVVRMCHTNGVMHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKNLVKGMLEPDPKKRLTAEQVLEHPWLQNAKKAPNVPLGDIVRSRLRQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIELGELQEALADESGETDADVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGITGQAVVV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00537 544 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Cca03g00537 544 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Cca03g00537 544 Pfam EF-hand domain pair 438 501 IPR002048 GO:0005509
Cca03g00537 544 Pfam EF-hand domain pair 368 427 IPR002048 GO:0005509
Cca03g00537 544 SMART efh_1 367 395 IPR002048 GO:0005509
Cca03g00537 544 SMART efh_1 403 431 IPR002048 GO:0005509
Cca03g00537 544 SMART efh_1 475 503 IPR002048 GO:0005509
Cca03g00537 544 SMART efh_1 439 467 IPR002048 GO:0005509
Cca03g00537 544 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Cca03g00537 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 520 - -
Cca03g00537 544 SUPERFAMILY Protein kinase-like (PK-like) 47 349 IPR011009 -
Cca03g00537 544 Gene3D - 329 504 - -
Cca03g00537 544 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Cca03g00537 544 Pfam Protein kinase domain 64 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00537 544 Gene3D Transferase(Phosphotransferase) domain 1 148 328 - -
Cca03g00537 544 CDD STKc_CAMK 61 319 - -
Cca03g00537 544 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Cca03g00537 544 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00537 544 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00537 544 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Cca03g00537 544 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Cca03g00537 544 SUPERFAMILY EF-hand 348 527 IPR011992 -
Cca03g00537 544 CDD EFh 439 501 IPR002048 GO:0005509
Cca03g00537 544 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Cca03g00537 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Cca03g00537 544 Gene3D Phosphorylase Kinase; domain 1 63 147 - -
Cca03g00537 544 PANTHER BNAA09G44420D PROTEIN 15 520 - -
Cca03g00537 544 MobiDBLite consensus disorder prediction 1 39 - -
Cca03g00537 544 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00537 Cca-Chr3 9034007 9039077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00537 1 544 EF-hand Containing Proteins AT1G74740 82.202 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca03g00537 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00537 K13412 - gmx:100809838 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00537 03 9034007 9039077 Cca03g00537 03 9034007 9039077 ECH