Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00535 ATGGGGTGGGTGGCGAATCGGTGGACCGGCGTCGCCGCCGCCATATGGATCCAGTGGAGCTGCGGCGCATCCTACACCTTCAGCATCTACTCCTCTGTGCTCAAGTCCACGCAGGGCTACGACCAATCCACCCTCGACACCGTCTCCGTCTTCAAGGACATCGGCGCCAACTTCGGCGTCCTCTCCGGCCTCCTCTACTCCGCCGTCACCCCCTACACGCGCCGCCACGACGTCCCCGGCTCCCCCTCCAAGTCCAAATGGACCTCTCTCGCCGGGCCCTGGGTCGTCCTCGCCGCTGGCGCCATCCAGTGCTTCGCGGGCTTCATCTTCATCTGGGCCGCCGTCGTGGGCCTCATAAGCCCGCCGCCCGTGCCCGTCATGTGCTTCTTCGCCTGGCTCGCCTCTAACGGCCAGACCTTCTTGAACACCACCAATGTCGTTACCGGCTTGCGCAATTTCCCCGAGTATAGCGGCACCATCATTGGTATCATGAAGGGTTTTCTTGGACTGAGTGGAGCTATCTTGATCCAAATCTACCATACGTTTTTTGATGGGGACCCAGCAACGTACCTTTTGATGCTTGCTTTGTTGCCTCCGTTCATCTGTTTGTTGCTTATGTTCTTGCTGAGGATTTATGAAGTGCATGGCAGTGATTACAAGAAGCATTTGGATGGTTTTTCTGTGGTTACTGTAATTATAGTTGCCTATCTCATGTTCATAATAGTTTTACAGAACGTGGTTAGTTTTCCTTATTGGGGACGGATGTTTGCATTTGTAATCCTTATGGTTCTGTTAGCATCGCCTTTTGGAATTGCTTTCAAGGCCCATTGGGAGGAGTCACGAAAGTTTGCACAATCCTACACCATTGAGAGGGGTTCTTCTACAAATAAGGGTACTAGTTCGTCCAATTATTCTCCGCCCGTGGATGAAGTGGAATACCATGAGCTTCCTAGTGATGAGGGGCAAGTACAAGTGACTTCAGATGATGTTTTGCCCCGTGAGGAAGAGAAGAACATCTTGCAAGCTATGTGCACGGTTGATTTTTGGATGTTGTTTGTGACCATGATATCAGGGTTGGGCTCTGGGCTTGCAACAATTAATAATATGAGCCAAATAGGACAATCCCTTGGTTATAGTACCATTGAGATTAATAATATGGTGTCACTGTGGAGCATGTGGAACTTCCTTGGTCGTTTTGGAGGTGGTCATGTATCGGATTATATCATGCACAGAAAAGGTTGGCCGAGGCCTCTGTTGATGGCTGCAACTTTGGGGATAATGGTTCTTGGCCATTTAACTATAGCTTCTGGTTTCCGTGGAACTTTGTATGTGGGTCCTGTCCTGGTGGGCATCTGCTATGGTGCACATTGGTCCTTGATGCCCACAATCACTTCTGAGATATTTGGTGTAAAGCATATGGGTACCATTTTCAACACTGTTGCTGCAGCAAGTCCACTTGGATCTTATATACTTTCCGTGAGAGTTGTTGGATATATTTATGACAAGCAAGCGGACAAAGCCGATAATTCATGCTTTGGCAACGACTGTTTCATGTTGTCATTTTTTATCCTGGCAGGGGTGGCTTTTATTGCATTTTTGGTTGGTTTGGCACTATACTTCCGGACCCGAAGGTTCTATAAGCTAGTTGTGATTAGAAGATTAAAACATTATGCATGA 1677 0.4878 MGWVANRWTGVAAAIWIQWSCGASYTFSIYSSVLKSTQGYDQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYTRRHDVPGSPSKSKWTSLAGPWVVLAAGAIQCFAGFIFIWAAVVGLISPPPVPVMCFFAWLASNGQTFLNTTNVVTGLRNFPEYSGTIIGIMKGFLGLSGAILIQIYHTFFDGDPATYLLMLALLPPFICLLLMFLLRIYEVHGSDYKKHLDGFSVVTVIIVAYLMFIIVLQNVVSFPYWGRMFAFVILMVLLASPFGIAFKAHWEESRKFAQSYTIERGSSTNKGTSSSNYSPPVDEVEYHELPSDEGQVQVTSDDVLPREEEKNILQAMCTVDFWMLFVTMISGLGSGLATINNMSQIGQSLGYSTIEINNMVSLWSMWNFLGRFGGGHVSDYIMHRKGWPRPLLMAATLGIMVLGHLTIASGFRGTLYVGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNTVAAASPLGSYILSVRVVGYIYDKQADKADNSCFGNDCFMLSFFILAGVAFIAFLVGLALYFRTRRFYKLVVIRRLKHYA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00535 558 SUPERFAMILY MFS general substrate transporter 6 211 IPR036259 -
Cca03g00535 558 Gene3D MFS general substrate transporter like domains 339 548 IPR036259 -
Cca03g00535 558 ProSiteProfiles Major facilitator superfamily (MFS) profile. 346 558 IPR020846 GO:0022857
Cca03g00535 558 Pfam Nodulin-like 92 272 IPR010658 -
Cca03g00535 558 Pfam Nodulin-like 7 69 IPR010658 -
Cca03g00535 558 Pfam Major Facilitator Superfamily 351 544 IPR011701 GO:0022857|GO:0055085
Cca03g00535 558 PANTHER F25A4.25 PROTEIN 5 557 - -
Cca03g00535 558 CDD MFS_Mch1p_like 7 531 - -
Cca03g00535 558 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 557 - -
Cca03g00535 558 SUPERFAMILY MFS general substrate transporter 235 544 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00535 Cca-Chr3 8996409 9001518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00535 1 556 Nodulin-like Gene Family AT1G74780 54.839 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00535 - - gmx:100799596 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00535 03 8996409 9001518 Cca03g00535 03 8996409 9001518 ECH