Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00532 ATGTCCCAAGGATCTCCCCCTCCCCCGCAGGACGCCGCCGAACCCGATTCGCACAAGGAGGAAACCACCGCTACCGCCGCCGCCGCCGATGCCGCTCCTCCCGCCCCCACGCGCAACCGCCCCTCCCGCGCCTGCACCATTCGCGCCGCCGCGCGTCTCTACTCGGCGTCGCAGCCGGCGAGGCCCAAGGCCGCGAAGAGGGAGCCTCGCCGCGAGGAGTCCCCGCCGCCGTCGCCGCCGCAGCCGCAGCAATGCAGCAAGATCGTGACGCCGCTGGTGGAGCCTCCCACGCCGGCGCAGTTGCCGCGCTATAACCTCCGGTCGATGTGGGAATTGGCTTCAATACTCAATTTTTTGAACCTGTTTAGGCCTTTGTTGAATATTTCAGTAGAATTCTCGGCTGAAGAGTTTGAGACGGCTTTGCTCACCCCCAATGACACATTGGGTGATATACATATGCCTTTGTTAAAGGCAATTCCTCCCATTACACGAATGGCACTCTCACGTGATACATGGATAACTGTATTATGCAGAAAATTGAGAGATTGGTGGCACTGGGTTGCAGATGGGGATCTTCCTATTGTTGCTTCACATGGAGTGGAGGTTGAAGTATATAAATCACTTGATCCAGGGGTTCGTGTGGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCAGAGGTTTCATTGACAGCTCAATCAAACGCGGGATTCAACTTTCGACATTCCGTAAGGAGCGTATTGGTGGTGATTCGCATGGAGTTTCTTATTGGTATGAAGATGACCCAGTTATTGGTCATAGGTTGTATCGGGAAATAAGGAAAACTGAGGTGGTTCAATTGAGGAAAGGGAAACCAAGGGGTTCCCAGGTTTTTTCTAATACAACCTACCAATGGGAAACAGTTGCTACCAATTTTGATGAATTTCAGGATGTTTCTGAGAAGCTTTTCACAAGTAAAAACAGAATGGAGGTTTCTGTAGGAAAGAAGGTGAAGATAGACATGCTCCCTGAAATTGAGAAAGAGCACAAGAGAAAGGAGAAATTGCTGAAGAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTGGGTGTTGATGGGCTTGCCCCAGGGCGTTCACTTCGTGATAGGAAACCTGTTACCTACACTTTTGATGATTACGATCGATCCATCAACGAGGCAATTAAGATAACCAAGTATGAAATGCATCTTTTGATCTTACATTCTTGTCCCTCTATTTGTCTGTTCTTGATGTGtttttttttatttgttttttattttttATGCTACATATATAGAGAGAAAAGGGGCCAATCATGTGCATCTGTTATGCTTTGTACTCACGGTTTAGTTCTGTTTCTATCTTTTATCAGACAGAAACCACCATCCCCAGAACCTATACCCAGGAGAGAAACAGGAGTAAAACCTGAAGGTTTAACCAATGGTAAATGGAGTGGTCCTTCACATGATCCTCAAGATCTAAATTTTGGCATGCCATCTCCAAAATCACCTGATTTTGATGATATGGAAGAAGAGAATGAAACTGACATGTTGGATCGAAGCAATCGAAGAAGACAGAGACCTAAACGGTATTCAGAGAAAGAGTTTGTTGAAGCAGTGTCAGATAATGAGGCTGACTATGACAGTGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAATATCTCCGAAAACGTAAGCAGAGAAGGAAGACTTCTAGTAGCTCTGGCTCTgaaggagatgaagaataccattgggatgaagataatgttgaagatgaagaagaagatgacgaggaagaagaTTCCTTGAGTGTCAGTGAGGACAGTGACAAGCCCCGAAAAATCAAGCGATTGCCAGGCCGTACCAGGAGGGGAACTAAACTCAGATCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACAAGAAACCAAATAAATTACCGACAGTATGAGATGTCTGATTCAGAAACAGAGTTCATTAAACCTGACAAGTCTAATGCATCAGATGATCACTCAGATCCTACTGAGAATGGGGATTATAATATGGAAAGTGAAGATTCAGATGGCAATGATGACGAAGACCAAGAAACCAAAGTAGTTGAGCCTCCTGAAAACAACCAATATCCTGCAGAAGAGAACAACCAATATCCTGCTGCAGAGGAGAAGGAAcaagaccaagaccaagaccaagaccaaAATCAGCCTCCCGAAAAATCAAGTAGTCCAGGTCAAGAGGAAGTTGAGGGCACCGCAAAGCGACGTTTCCTTGATTTGAATGAGCTTGCCCCTAGCTCAGGTTTTGATGATGGTCCTAATACAACAACAAAAGATGAAGGCAATGATGATTTCTGA 2385 0.4365 MSQGSPPPPQDAAEPDSHKEETTATAAAADAAPPAPTRNRPSRACTIRAAARLYSASQPARPKAAKREPRREESPPPSPPQPQQCSKIVTPLVEPPTPAQLPRYNLRSMWELASILNFLNLFRPLLNISVEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGVEVEVYKSLDPGVRVVILKALCDIRVEQEDIRGFIDSSIKRGIQLSTFRKERIGGDSHGVSYWYEDDPVIGHRLYREIRKTEVVQLRKGKPRGSQVFSNTTYQWETVATNFDEFQDVSEKLFTSKNRMEVSVGKKVKIDMLPEIEKEHKRKEKLLKKQHRQALLLDNFLGVDGLAPGRSLRDRKPVTYTFDDYDRSINEAIKITKYEMHLLILHSCPSICLFLMCFFLFVFYFLCYIYREKRGQSCASVMLCTHGLVLFLSFIRQKPPSPEPIPRRETGVKPEGLTNGKWSGPSHDPQDLNFGMPSPKSPDFDDMEEENETDMLDRSNRRRQRPKRYSEKEFVEAVSDNEADYDSDDDIVGEAVYDEEYLRKRKQRRKTSSSSGSEGDEEYHWDEDNVEDEEEDDEEEDSLSVSEDSDKPRKIKRLPGRTRRGTKLRSVGEIQSGLRRSKRATRNQINYRQYEMSDSETEFIKPDKSNASDDHSDPTENGDYNMESEDSDGNDDEDQETKVVEPPENNQYPAEENNQYPAAEEKEQDQDQDQDQNQPPEKSSSPGQEEVEGTAKRRFLDLNELAPSSGFDDGPNTTTKDEGNDDF 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00532 794 MobiDBLite consensus disorder prediction 521 546 - -
Cca03g00532 794 PANTHER REMODELING AND SPACING FACTOR 1 463 794 IPR028938 GO:0006355|GO:0031213
Cca03g00532 794 PANTHER REMODELING AND SPACING FACTOR 1 18 405 IPR028938 GO:0006355|GO:0031213
Cca03g00532 794 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 463 794 - -
Cca03g00532 794 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 18 405 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 588 612 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 727 743 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 665 689 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 648 664 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 547 562 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 468 794 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 690 709 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 1 86 - -
Cca03g00532 794 MobiDBLite consensus disorder prediction 563 587 - -
Cca03g00532 794 Coils Coil 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00532 Cca-Chr3 8894900 8904020 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca03g00532 DDT 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00532 - - gmx:100796430 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00532 03 8894900 8904020 Cca03g00532 03 8894900 8904020 ECH
Cca11g01903 11 44276378 44286425 Cca03g00532 03 8894900 8904020 PCT