Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00530 ATGGTGAGGTCTCCTTGTGAAAAAATCAATGTCAAAAGGGGTGTATGGACTGCAGAAGAAGATAGAAATAAGCTTGCATTTGGCTCCAAGCATGGATCTGGGCTCAAGAGATGTGGAAAGAGTTGTAGGCTTAGGTGGAGTAACTGCCCCAGGCCTGATCTTAAGCATGACAATTTCACCACCCAAGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCTCAACAACTTCCTGGGAGAACAGACAATGATGTGAAGAACCATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGGATTGACCCTGTTACTCATAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAGCCTAGTACCCAAATTGGGTCCATCAATAAAGACTTCAAGAACGCAATGATGTTGAAATCAGAGTCCCATCAAACACAGCCCCAAGAATTTAGAAACACCAATGACCAACCAAAGCTACCACCGACATCACCACCCAAAATTGAAACTACCAGAACTAACTTTTTGTTCAATAGAACTCATAGTGATAACATCTCAATGGATCTTGCCCAAGTCCAAGGCATGCCAATGATGTCAGATGCCTCAAATTGCTTAGACTTTGAGAATGGATCTGTGTTTGGGGAAGATTGCTTGTCAAAAACTTCATCACCATCTATTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTACAACACCATTTTGTGATAATCATGAACATGACATGTTGATGTCAAAGGACTTGGTGAGCCAAATAGAGAATGTGACCAGACAAAGTAGTGACTTCCAATTTTCATCATCTTCTGACATTTCATTCATAGAAGCCATGCTTGACCAAGAAAATGAGATGTTCCTAAGTTTTCCTCATCTTATGGAGGAACCATCCAATTTGAGTTAA 981 0.4077 MVRSPCEKINVKRGVWTAEEDRNKLAFGSKHGSGLKRCGKSCRLRWSNCPRPDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNHWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSTQIGSINKDFKNAMMLKSESHQTQPQEFRNTNDQPKLPPTSPPKIETTRTNFLFNRTHSDNISMDLAQVQGMPMMSDASNCLDFENGSVFGEDCLSKTSSPSIPSTCSTSAFSWNDFLLEDAFTTPFCDNHEHDMLMSKDLVSQIENVTRQSSDFQFSSSSDISFIEAMLDQENEMFLSFPHLMEEPSNLS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00530 326 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Cca03g00530 326 SMART sant 55 103 IPR001005 -
Cca03g00530 326 SMART sant 12 52 IPR001005 -
Cca03g00530 326 Gene3D - 57 119 - -
Cca03g00530 326 SUPERFAMILY Homeodomain-like 36 109 IPR009057 -
Cca03g00530 326 MobiDBLite consensus disorder prediction 153 170 - -
Cca03g00530 326 Coils Coil 324 326 - -
Cca03g00530 326 MobiDBLite consensus disorder prediction 153 181 - -
Cca03g00530 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Cca03g00530 326 CDD SANT 58 101 IPR001005 -
Cca03g00530 326 PANTHER F14D16.11-RELATED 1 323 - -
Cca03g00530 326 Pfam Myb-like DNA-binding domain 58 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00530 Cca-Chr3 8861362 8862957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00530 1 321 MYB Transcription Factor Family AT3G28470 40.058 4.39e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g00530 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00530 K09422 - gmx:100795381 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00530 03 8861362 8862957 Cca03g00530 03 8861362 8862957 ECH