Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00528 ATGGAACCTCCTCTCATCAGCGACTCCCTCTCCGAGATTTGGCCCGGAATGCGCAAGAGGAAGGACGCCGCCGCAGAGGACCACTGCTCCAACCTCCTCTCCTccaccgccaccgccaccgccaccgccaACCAATCCAATAATGATTCTGGGAGCCATAAACGGATCAAGTTAGGGGGGTCCAGCGTTGAAAATGATGCTTTGAAAGCTGAGGCAGAAGCAAGTTCCGCAGGGGGTAACAAGTCGAGTGAACAAAGCACTAAACCTTCTTCTGAGGCACCGAAGCAAGACTATATTCATGTGAGAGCTAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCTTGGATGAGATAATCAATTACATCCAATCGCTGCAGCGTCAGGTTGAGTTCCTTTCGCTGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAACCCTACTTTTGATGGGTTTCCTTCAAAAGATGTTGGTTCTCAACCATTTGACATTGCTGAAATGGTATTTGGGTCACAAGCAGCTAGGGGGTATACTCAGGGATCACATACTGGCTGGCTGCATATGCAGACAAGTGGTGGTTTTGAGAGAACATCATAA 693 0.4488 MEPPLISDSLSEIWPGMRKRKDAAAEDHCSNLLSSTATATATANQSNNDSGSHKRIKLGGSSVENDALKAEAEASSAGGNKSSEQSTKPSSEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSLKLEAVNSRMNMNPTFDGFPSKDVGSQPFDIAEMVFGSQAARGYTQGSHTGWLHMQTSGGFERTS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00528 230 Coils Coil 154 174 - -
Cca03g00528 230 MobiDBLite consensus disorder prediction 76 93 - -
Cca03g00528 230 MobiDBLite consensus disorder prediction 36 96 - -
Cca03g00528 230 CDD bHLH_AtBPE_like 97 180 - -
Cca03g00528 230 PANTHER BNAC05G07950D PROTEIN 16 230 - -
Cca03g00528 230 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 230 IPR024097 GO:0006355
Cca03g00528 230 Gene3D - 104 180 IPR036638 GO:0046983
Cca03g00528 230 MobiDBLite consensus disorder prediction 36 55 - -
Cca03g00528 230 Pfam Helix-loop-helix DNA-binding domain 111 158 IPR011598 GO:0046983
Cca03g00528 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 177 IPR036638 GO:0046983
Cca03g00528 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 157 IPR011598 GO:0046983
Cca03g00528 230 SMART finulus 113 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00528 Cca-Chr3 8831756 8835844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00528 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 45.614 3.73e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00528 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00528 - - gmx:100777819 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00528 03 8831756 8835844 Cca11g01899 11 44234742 44238079 ECH
Cca03g00528 03 8831756 8835844 Cca03g00528 03 8831756 8835844 ECH