Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00524 ATGCCTCACTCCGCCGAGTTCATGCTCTTCGGTGTCCGAGTCGTCGTCTACTCCATTATGAATATCGTCAGCGTTAACAACCTCTCTCAGTACGACCTCCCTCGcgacgcctccgccgccgccaaagacgacgccgtcgtcaccgccggctacgcctccgccgacgacgctgcTCCGACCAACTCCGGCAAGAGCCGCGACCGCAAGCGAGGGATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGGTTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATTTCAAGGAACTATGTTAAAACGCGGACACCAACACAGGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCACCAACCTCAATCGCCGTCGCCGTAGATCTAGTCTCTTTGACATCACCACGGTCTCGGTTTCTACAACCCCGATGGAGGAAGGACAGGTCCAGCATCAAGATGACGTGTCTCTTCTGCATCCGGTGTACCCTGTAACCCCTGAAGGAAGCACCATGAATGGATTTCCCATGATGCCCTTGTATCCGAAGGATGTTGGTTCTGGAGTCATGTCAGTTCAGGGTGGGAATCCAATGGAAACACTCACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCAAGTACTAAGCTAGTTTGTACCACCCCTATTGTTCCAGATCATAAATGCTCAACAGTGTCTGATATCACTGCCAGTTTGAGTTCATTTGATCCACCAACGCTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAGACATCATCAAGACATTCAGCTTTACATGCACTTCCGTGCTTCAACAATGGAGATAGCATAATAAGTGTTGCTTGA 855 0.455 MPHSAEFMLFGVRVVVYSIMNIVSVNNLSQYDLPRDASAAAKDDAVVTAGYASADDAAPTNSGKSRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTVSVSTTPMEEGQVQHQDDVSLLHPVYPVTPEGSTMNGFPMMPLYPKDVGSGVMSVQGGNPMETLTLGQGNVEQNGPSTKLVCTTPIVPDHKCSTVSDITASLSSFDPPTLSLGLSLSSSQRQTSSRHSALHALPCFNNGDSIISVA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00524 284 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 7 284 - -
Cca03g00524 284 SMART sant 70 120 IPR001005 -
Cca03g00524 284 Gene3D - 72 124 - -
Cca03g00524 284 ProSiteProfiles Myb-like domain profile. 66 118 IPR001005 -
Cca03g00524 284 SUPERFAMILY Homeodomain-like 68 122 IPR009057 -
Cca03g00524 284 CDD SANT 73 118 IPR001005 -
Cca03g00524 284 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 69 120 IPR006447 GO:0003677
Cca03g00524 284 PANTHER KIN2 7 284 - -
Cca03g00524 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 122 IPR017930 -
Cca03g00524 284 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Cca03g00524 284 ProSiteProfiles SANT domain profile. 74 122 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00524 Cca-Chr3 8730593 8733816 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g00524 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00524 - - gmx:778057 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01894 11 44190631 44192665 Cca03g00524 03 8730593 8733816 PCT