Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00519 ATGTCATCCCCTAGTAATGCAATTGCAAAGGCTGTGGCTGCTACAGCTGGGGCAATGTTACTCATTGCTGCAGTTTTTGTTTACTTTTTTTACAAATATGTTCTTGCTAGATACCACCAGAGACACAAAGTTGGAGCAAGTTTGCTTCGAGAATCAGGGGTGAACCTTGAGTATATAAACAAAGTTGGAGGCAATGTGAAGGGGTTAATAGTTGAAGAAAATGGTGTTGATGTACTTTATGTGATGGACACAGAAAGAAGACCTTTGATAACTGGATTCACAAATAGTATATTCAATCCAAGTTATGAAGATGATGGAGAAGAGAAGAGAATTGATATAATGGTCCAAAGGTCCAAAGTATCCGAGCCTCAGATTCCACCAGCATGTGAATCTCCAAGCTTGGTTGGTCAAGAGAATCAAGTTAAGCCAGTGTCACAAATATCATCAGTTTCTACATCACTAACACCAAGACAAAATTTGCAACAATCACCTCAGCTAGCACCTCCACTTCAACCAATACCACAATCTTCACCAATGATTATTGAGAAAAAGGAAActcaaacaccaccgccaccacctcctcctcctccaactcgtcctccacctccaccacctggtccacctccacttccAAGGGCCAGTGGCTTCATTTCGTCACTGAAACCACCACCTGCTCCTAGAGGGAAAGCAAATATGAAAAACACTAAAGAGGGTGTGGTAGGAGAGAGTTCAAGAGAGAAGGGTGTTGGCCAAACAAAGCTGAAGCCTCTACACTGGGATAAGGTTGCTGCAAACGTTGATCATTCAACAGTGTGGGATCAGATCAATGATGGATCTTTCCGGTTTGATGATGAACTAATGGAAACACTCTTTGGATATTCAAACAGCAACAAAACCCAAGAAAGAAACAGAACTCTTTCCTCTTTGGCCAAGTCCAATCCCAACCAACCAGCTCAAATATTCATTCTTGAGCCAAGAAAATCTCAAAACACTGCAATTGTGCTAAGATCACTTGCCATTTCTCGCAAGGGAATCTTGGATGCACTACTTGATGGTCAGGGACTCAGTGTTGAGACACTTGAAAGACTCACTAAAATAGCTCCCACCCAAGAAGAGGAAGCCAAAATCATCCAATTCAGTGGCAACCCTGATCAGCTTGCTGATGCTGAGTCTTTCCTATACCACATTCTCAAAGCAGTTCCAACAGCATTCAACCGTTTGAAAGCAATGCTTTTCAGGTCGAGTTATGATTGTGAGGTTCTTCAGCTCAAGGAACAGCTACAAACACTTGAAAGGGGTTGCAAGGAACTAAGAACTAGCGGCCTGTTTTTGAAGCTCCTTGAGGCCATTCTGAAAGCTGGGAACAGGATGAATGCTGGAACTTCAAGAGGCAATGCACAAGGTTTCAATCTGAGTGCTCTTAGAAAACTTTCTGATGTGAAAAGCACAGATGGCAAGACCAGTTTGCTTCACTTCATAGTGGAACAAGTGGTTCAGTCAGAAGGAAAAAGACAAGCTATGTATCAAAAGCACAACCATCACTTAAGAAATGGTGAAGCAAGCAATGTGAATGTGAATAGACCTTATTCATATAGCATGGTGCAACAAGAGGCAGATAAAGAACATGCAATGCTTGGTTTGCAAGTGTTAGGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCAGCTAGCATTGAGTATCACAATTTCATCACTATGTATTCTTCTCTCAATGCTCATGTAAGTGAAATTAGACAGATTATAACATGCTGTGGCAACACTAGGAGTGGTGGATTTATCCACGAAATGAAAGGGTTCCTAGAGGAATGTGAAGGAGAAGTTGAGGTGGTGAAAGAGGAGCAAACAAGGATCATGGAGCTTGTGAAAAAAACAAACGAGTTCTACCTAGCAGGTGCATCAAAAGACAATATGACAAACCCCTTTCAACTGTTTGTGATTGTAAAAAATTTTGCTGACATGGTAGATCAGGCTTGCATAGAACTGAAAAGGAAGGTAGAAAAGAAGAATGTGGGAGGAGAGGCTGTGTCAACAACACCACCTTTATCACCTTCAAGGAGGACGCAACTCAGATTCCCTAACTTTGATTTGTATTTTCTGTCAAATGTGTCAGAAACTACATCTTCTAGCCAATCAGAAGATGATTTCTGA 2172 0.3964 MSSPSNAIAKAVAATAGAMLLIAAVFVYFFYKYVLARYHQRHKVGASLLRESGVNLEYINKVGGNVKGLIVEENGVDVLYVMDTERRPLITGFTNSIFNPSYEDDGEEKRIDIMVQRSKVSEPQIPPACESPSLVGQENQVKPVSQISSVSTSLTPRQNLQQSPQLAPPLQPIPQSSPMIIEKKETQTPPPPPPPPPTRPPPPPPGPPPLPRASGFISSLKPPPAPRGKANMKNTKEGVVGESSREKGVGQTKLKPLHWDKVAANVDHSTVWDQINDGSFRFDDELMETLFGYSNSNKTQERNRTLSSLAKSNPNQPAQIFILEPRKSQNTAIVLRSLAISRKGILDALLDGQGLSVETLERLTKIAPTQEEEAKIIQFSGNPDQLADAESFLYHILKAVPTAFNRLKAMLFRSSYDCEVLQLKEQLQTLERGCKELRTSGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALRKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQAMYQKHNHHLRNGEASNVNVNRPYSYSMVQQEADKEHAMLGLQVLGGLSDELSEAKKAASIEYHNFITMYSSLNAHVSEIRQIITCCGNTRSGGFIHEMKGFLEECEGEVEVVKEEQTRIMELVKKTNEFYLAGASKDNMTNPFQLFVIVKNFADMVDQACIELKRKVEKKNVGGEAVSTTPPLSPSRRTQLRFPNFDLYFLSNVSETTSSSQSEDDF 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00519 723 MobiDBLite consensus disorder prediction 119 251 - -
Cca03g00519 723 MobiDBLite consensus disorder prediction 185 212 - -
Cca03g00519 723 Pfam Formin Homology 2 Domain 251 662 IPR015425 -
Cca03g00519 723 PANTHER FORMIN-LIKE PROTEIN 2 719 - -
Cca03g00519 723 Coils Coil 420 440 - -
Cca03g00519 723 MobiDBLite consensus disorder prediction 133 166 - -
Cca03g00519 723 Gene3D Formin, FH2 domain 265 681 IPR042201 -
Cca03g00519 723 ProSiteProfiles Formin homology-2 (FH2) domain profile. 244 688 IPR015425 -
Cca03g00519 723 PANTHER FORMIN-RELATED 2 719 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca03g00519 723 SUPERFAMILY Formin homology 2 domain (FH2 domain) 200 676 - -
Cca03g00519 723 SMART it6_source 246 677 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00519 Cca-Chr3 8633621 8636647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00519 8 721 FH2 protein (formin) Gene Family AT1G70140 42.313 1.06e-159 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00519 - - gmx:100791689 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00519 03 8633621 8636647 Cca03g00519 03 8633621 8636647 ECH