Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00518 ATGGCTGCCGCCGCTGATCTTCTCATGCCGGAAATGGGTGCCGGAAAGTTGCACGTGCTCGCCGTTGATGACAGCCACGTCGACCGCAAGGTCATTGAACGCTTGCTAAAAATCTCGTCTTGCAAAGTGACGGTGGTGGAGAGTGGGAGCATGGCTCTGCGGTATTTGGGGTTGGATGGGGATGAGAGCTCCATTGGTTTTGATGGTGTGAAGGTTAATTTGATTATGACAGACTATTCTATGCCGGGGATGACTGGATATGAATTACTCAAGAAGATAAAGGAGTCGTCTGTATTTAGAGAGATTCCAGTGGTGGTTATGTCTTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAGGGAGCAGAGGAATTTCTGCTGAAACCTGTCAAGTTGTCAGATGTAAAACGCGTAACAGATTTCATCATGAGAGGTGAAGGAAAGAATGGAATAAGAAGATCTCTGAAAAGAAGCCGATCAGATGATCACACTCCATCTCTAACAGCTGCATTCTCATCAGTTTCTCATCCATGCGATCTATCATCGTCTCCATCACCACCTGTATCGCACTCGAAGAAATCTAGATTGATCATAGATTGA 606 0.4571 MAAAADLLMPEMGAGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSMALRYLGLDGDESSIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRVTDFIMRGEGKNGIRRSLKRSRSDDHTPSLTAAFSSVSHPCDLSSSPSPPVSHSKKSRLIID 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00518 201 ProSiteProfiles Response regulatory domain profile. 18 145 IPR001789 GO:0000160
Cca03g00518 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 12 198 - -
Cca03g00518 201 MobiDBLite consensus disorder prediction 177 201 - -
Cca03g00518 201 Pfam Response regulator receiver domain 19 138 IPR001789 GO:0000160
Cca03g00518 201 Gene3D - 16 183 - -
Cca03g00518 201 SMART REC_2 17 141 IPR001789 GO:0000160
Cca03g00518 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 198 IPR045279 GO:0009736
Cca03g00518 201 SUPERFAMILY CheY-like 16 146 IPR011006 -
Cca03g00518 201 MobiDBLite consensus disorder prediction 177 192 - -
Cca03g00518 201 CDD REC_typeA_ARR 19 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00518 Cca-Chr3 8628843 8631403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00518 17 148 Response Regulator Gene Family AT5G62920 79.545 3.29e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g00518 Response_reg 3.8e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00518 K14492 - gmx:100819165 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00518 03 8628843 8631403 Cca11g01886 11 44080538 44082896 ECH
Cca03g00518 03 8628843 8631403 Cca03g00518 03 8628843 8631403 ECH