Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00515 ATGTCTTCTTCCTCAACGCACCACACTTACAGCCGAAAGCAGAAATCTCTCGGCCTCCTCTGCACTAATTTCCTAAGCTTATACAACAAAGAAGATGTCCGCTCAATCGGTCTCGACGACGCCGCTTTGCGATTAGGCGTCGAAAGGCGACGGATCTACGATATCGTTAACGTATTGGAGAGTGTCGGAGTAAGATTCTCTTTTACTTCATCAAAAATcaattacaattacaattgcaattacaattacTCTCTTTGTTGCTCATTTTATCTTAATTTTCAGGACGAAGGTTTTAAGGAGAATCCAGCATCTTTCGATGGTTCTAATGATAGTGGAAAAATGTCTGATGATGAGGATGAAGAGGAAACGTTTCCCAATCTTGACACTGAAACGCAGAATGATAAGGAACATCCTGATTCCGCCGCGCCTGCCAAATCGATCAAGACGGAAAACAGAAGGGAAAAATCTTTGGCACTGCTTACTCAGAATTTTGTCAAGCTTTTTATCTGCTCTAATATTGAAATGATCACCCTTGATGAAGCTGCAAAGTTGTTGCTTGGAAATGCCCATAAAATAATGAGAACAAAAGTCAGACGCCTATATGATATTGCGAATGTGCTATCCTCCATGAACCTAATCGAGAAGACCCATGCAACAAACACAAAAAAACCAGCATTTAGGTGGCTGGGTTTTAGAGGGAAACAAAGGAATGAATCAGTTGACATAGTTCACAATTCAAATATCAAGGAGCCAAGGAAAAGGATGTTTGGAAGTGACATCACAAATGTAGTTTTTAAAAGAAACAGAGTTGATCTCTTCATGGATGACCAGAACTCTAAAATGCAAAACCAACAGGAAAAAATGAGTCACGGAGCCCAGCCAGAGAAAAACAACTTAGAAAAAAGTGCAAAACAGACTTCAAAGAGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGTGCCTAAAGTAGGAACATCTGAAAATAATAGTGTGAAAAAGGAGCATAACTGGGACAGCCTCGCCCTGGTCCATCGTCCTCAATATCAAAACCAAGCTTTGAAAGACCTATTCTCTCACTTCATGGATGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAAAAGTGA 1128 0.398 MSSSSTHHTYSRKQKSLGLLCTNFLSLYNKEDVRSIGLDDAALRLGVERRRIYDIVNVLESVGVRFSFTSSKINYNYNCNYNYSLCCSFYLNFQDEGFKENPASFDGSNDSGKMSDDEDEEETFPNLDTETQNDKEHPDSAAPAKSIKTENRREKSLALLTQNFVKLFICSNIEMITLDEAAKLLLGNAHKIMRTKVRRLYDIANVLSSMNLIEKTHATNTKKPAFRWLGFRGKQRNESVDIVHNSNIKEPRKRMFGSDITNVVFKRNRVDLFMDDQNSKMQNQQEKMSHGAQPEKNNLEKSAKQTSKSYQFGPFAPAYVPKVGTSENNSVKKEHNWDSLALVHRPQYQNQALKDLFSHFMDAWKSWYSEVAGKK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00515 375 MobiDBLite consensus disorder prediction 113 127 - -
Cca03g00515 375 Pfam E2F/DP family winged-helix DNA-binding domain 154 230 IPR003316 GO:0005667|GO:0006355
Cca03g00515 375 Pfam E2F/DP family winged-helix DNA-binding domain 13 64 IPR003316 GO:0005667|GO:0006355
Cca03g00515 375 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 4 370 - -
Cca03g00515 375 SMART E2F_TDP_2 152 230 IPR003316 GO:0005667|GO:0006355
Cca03g00515 375 SMART E2F_TDP_2 12 79 IPR003316 GO:0005667|GO:0006355
Cca03g00515 375 Gene3D - 147 232 IPR036388 -
Cca03g00515 375 Gene3D - 7 78 IPR036388 -
Cca03g00515 375 PANTHER TRANSCRIPTION FACTOR E2F 4 370 IPR015633 GO:0000978|GO:0006357
Cca03g00515 375 MobiDBLite consensus disorder prediction 102 148 - -
Cca03g00515 375 SUPERFAMILY "Winged helix" DNA-binding domain 154 231 IPR036390 -
Cca03g00515 375 MobiDBLite consensus disorder prediction 128 148 - -
Cca03g00515 375 SUPERFAMILY "Winged helix" DNA-binding domain 11 64 IPR036390 -
Cca03g00515 375 MobiDBLite consensus disorder prediction 280 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00515 Cca-Chr3 8579293 8583952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00515 7 372 E2F-DP Transcription Factor Family AT3G48160 49.474 4.16e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca03g00515 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00515 K09391 - gmx:100818090 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00515 03 8579293 8583952 Cca03g00515 03 8579293 8583952 ECH
Cca11g01884 11 44057216 44069329 Cca03g00515 03 8579293 8583952 PCT