Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00513 ATGGCAATCTCAGTACCCAGTAGACAACTATTCATAGATGGAGAGTGGAGAGTCCCAGTTCTCAACAACAGGATTCCGATCATCAACCCCGCCACTGAAGACATAATAGGGAATATCCCAGGTGGAACTAAGGAAGATGTTGAGCTTGCTGTGGATGCTGCTAAAAGAGCACTGTCCCGGAACAAGGGCAGAGATTGGTCAGCTGCTCCTGGCTCCCTTCGTGCTCGTTATCTTCGAGCCATCGCTTCAAAGATAACGGAGAAAAAGGATGAACTAGGAAAACTCGAAGCAATTGATTGTGGAAAACCGCTAGAGGAAGCATTGGCAGACCTGGATGATGTTATTGGTTGTTTTAACTACTATGCGGAGCTTGCCGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCCCTTCCTATGGAGACCTTCAAGAGTTATGTTCTCAAGGAGCCCCTTGGGGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCTACATGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTACTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACTTGTTTGGAGCTGGCTGAAATATGCAGAGAAGTGGGCCTTCCTCCAGGGGTGTTAAATATTGTCACTGGATTAGGCCATGAAGCTGGTGCTCCTCTGGCTTCTCATCCAGATGTGGCCAAGGTTGCCTTTACTGGAAGCTCTGTAACTGGGAGCAAGATTATGACAGCTGCAGCACAGCTAGTCAAGCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGACTGCTGAATGGACAATCTTTGGTTGCTTCTTTACAAATGGTCAGATATGCAGTGCAACATCTCGCCTTATTGTGCATGAAAGTATAGCTACAGAATTTGTGAATAGGCTTGTGAAATGGGCCAAAAACATCAAAATTTCGGATCCCTTGGAAGAAGGTTGCAGGCTAGGTCCTATTGTTAGTGAAGGACAGTATAAAAAAGTGTTGAATTTTATCTCAAATGCTAAGAGTGAGGGTGCAACAATTTTGACTGGTGGATCTCGCCCAGAGCATTTAAAAAAGGGGTACTTTGTTGAACCAACCATCATAACTAACGTGACTACCTCCATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTGTCAGTGAAAACATTCAGTACCGAGGAAGAAGCTATTGAACTAGCAAATGACACCCACTACGGATTAGGGTCTGCTGTGATGTCAAAAGATCTAGAAAGATGTGAGCGCCTATCTAAGGCTATTCAGGCTGGAATTGTATGGATAAACTGTGCTCAACCAAGCTTCATTCAAGCTCCATGGGGAGGCATTAAACGTAGTGGTTTTGGTCGAGAATTGGGAGAATGGGGACTGGAGAACTATTTAAGTGTGAAGCAAGTGACCCAATACATATCTGATGAACAGTGGGGTTGGTATCAGTCTCCTTCAAAGCTGTGA 1512 0.4471 MAISVPSRQLFIDGEWRVPVLNNRIPIINPATEDIIGNIPGGTKEDVELAVDAAKRALSRNKGRDWSAAPGSLRARYLRAIASKITEKKDELGKLEAIDCGKPLEEALADLDDVIGCFNYYAELAEGLDAKQKAPVSLPMETFKSYVLKEPLGVVALITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELAEICREVGLPPGVLNIVTGLGHEAGAPLASHPDVAKVAFTGSSVTGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVNRLVKWAKNIKISDPLEEGCRLGPIVSEGQYKKVLNFISNAKSEGATILTGGSRPEHLKKGYFVEPTIITNVTTSMQIWREEVFGPVLSVKTFSTEEEAIELANDTHYGLGSAVMSKDLERCERLSKAIQAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEQWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00513 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Cca03g00513 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Cca03g00513 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 503 - -
Cca03g00513 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Cca03g00513 503 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 1 503 - -
Cca03g00513 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Cca03g00513 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Cca03g00513 503 CDD ALDH_F10_BADH 27 487 - -
Cca03g00513 503 SUPERFAMILY ALDH-like 5 491 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00513 Cca-Chr3 8547238 8552666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00513 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 78.044 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00513 K00130 - gmx:100170755 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00513 03 8547238 8552666 Cca03g00513 03 8547238 8552666 ECH
Cca11g01883 11 44036737 44041112 Cca03g00513 03 8547238 8552666 PCT