Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00508 ATGGGTGGCAACGGGAAACGCAGGTGGAAAATCTTTCACCGTTCCTCCAACCTCGACCCCAAGCTCCCTCCCAAGGAGTTCACGTGCCCCATCACCGGCTGCTTAATGTCCGACCCTGTCGTCGTAGCTTCGGGCCAAACCTTCGAGCGCCTCGCCGTCCAGCTCTGCCACGACCTTAAATTCTCCCCGAACCTCCACGACGGGACCCGACCCGATTTctcaaccctcatcccgaacctcgccctcaaaaccacaatcctcaacTGGTGCCGCACCTCCCGCACCGAGCACCCGCCCGCACCGGATCACGCCTCCGTCGAACGCCGAATTAGAGAAGCCATGGAAAAAGACCAAACAACTAGGGTTTCCGATGAGGAACTCCTCAACGCCGTCGCGGACACTCCCCCGCGCGTATTCTCCCACGCCGCCACCGAGTTAGGCCCCCGAGTCAACCACTTCAACTCGGCCTCGTCCTCCGAGGAATCCGTCATAATCCCTCCGAGTCCGGGAACGCCGTTGCCGTTAACGATTCGTCCCACGTGTTTCTCCTCTTCCTCCTCGGGCGAGATCGAAATCGAAAACCCTAGCGCGCCGGCATCGGAAGAAGAGGAATCAATATTGAAGAATCTAAAGAGCAGCGCGGTGTTTGAGCAAGAAGAGGGAGTCATCGCGCTGAGGAAGGTCACGCGGAGCAACGAGGAGGTTAGGGTTTCGCTCTGCACGCCGCGCGTGCTGTTGGCGCTTCGTGGTTTAATTGCGTCGCGATACGGCGTCGTTCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTTTCGCTGGAGAAGCAGAACAAGGTGAGAATCGTGAGGTCGGGGTTTGTTCCCTTACTCGTGGATGTTTTGAAGGAGGGATTGGGTGAGTCGCAGGAACACGCTGCGGGCGCGCTTTTTAGTTTAGCGTTGAATGATGACAACAAAATGGCGATTGGCGTTCTCGGCGCGTTGCAGCCCTTGATGCACGCGCTGCGTGCCGAGTCCGAGCGGACTCGCCACGACTCGGCGCTTGCGCTGTACCATTTGAGTCTGGTTCAGAGCAACCGGGTTAAGTTGGTGAAACTCGGCGTCATTCCGACGCTGCTCTCGATGGTGGCCGCGGGGGACTTGGCGGGGCCGGTGCTGCTCATTCTCTGCAACCTGGCCGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCCAACGCGGTGGAGTGTTTGGTGGGGCTTCTGAGGGGGAACGAGTTGGACTCGGTGGCCACTCGGGAGAATTGCGTGGCGGCGCTGTACGCGCTGAGTCACCGGAGCTTGAGGTTCAAGGGGTTGGCGAAGGACGCGAGGGTGGTGGAGGTTTTGAAGGAGGTGGAAGAAACGGGCACGGAGAGGGCCAGGGAGAAGGCGAGGAAGGTGTTGTACGTGTTGAGGACTGTGGTAGATGGAGACGGTGATGAGGGTGACGAGTTTTTCGAATCGGCCGGATTGACTCGGAATCGGTACCGAGTCGGTCCTGCCAGGAGTCACAACCTGGTCAACACGACCACGTTTTAG 1557 0.5793 MGGNGKRRWKIFHRSSNLDPKLPPKEFTCPITGCLMSDPVVVASGQTFERLAVQLCHDLKFSPNLHDGTRPDFSTLIPNLALKTTILNWCRTSRTEHPPAPDHASVERRIREAMEKDQTTRVSDEELLNAVADTPPRVFSHAATELGPRVNHFNSASSSEESVIIPPSPGTPLPLTIRPTCFSSSSSGEIEIENPSAPASEEEESILKNLKSSAVFEQEEGVIALRKVTRSNEEVRVSLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVRIVRSGFVPLLVDVLKEGLGESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGVIPTLLSMVAAGDLAGPVLLILCNLAVCTEGRTAMLDANAVECLVGLLRGNELDSVATRENCVAALYALSHRSLRFKGLAKDARVVEVLKEVEETGTERAREKARKVLYVLRTVVDGDGDEGDEFFESAGLTRNRYRVGPARSHNLVNTTTF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00508 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 321 IPR000225 GO:0005515
Cca03g00508 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 96 IPR013083 -
Cca03g00508 518 PANTHER U BOX DOMAIN-CONTAINING 1 509 - -
Cca03g00508 518 SMART arm_5 273 313 IPR000225 GO:0005515
Cca03g00508 518 SMART arm_5 314 354 IPR000225 GO:0005515
Cca03g00508 518 SMART arm_5 394 437 IPR000225 GO:0005515
Cca03g00508 518 Gene3D - 191 497 IPR011989 -
Cca03g00508 518 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Cca03g00508 518 Pfam Armadillo/beta-catenin-like repeat 314 353 IPR000225 GO:0005515
Cca03g00508 518 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 509 - -
Cca03g00508 518 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Cca03g00508 518 SUPERFAMILY RING/U-box 10 97 - -
Cca03g00508 518 Pfam U-box domain 24 93 IPR003613 GO:0004842|GO:0016567
Cca03g00508 518 SUPERFAMILY ARM repeat 205 477 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00508 Cca-Chr3 8379338 8381971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00508 1 505 U-box Gene Family AT5G65200 56.354 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00508 - - gmx:100784564 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00508 03 8379338 8381971 Cca03g00508 03 8379338 8381971 ECH