Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00504 ATGGCATCATTTGCAGGGACTACCCAAAAATGCAAAGCATGTGAGAAGACTGTATACTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCCTGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAATTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACAGGCAGCTTGGACAAAAGTTTTGAAGGGATTCCAAGAACTGTCAGACTTGAAAGATCTACTGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACCGTGTACCCAATTGAGAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTCATGGAGGATGTGTAATTAGCCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGGCACCATCACACACAATTGTTCAAGCAGAAAGGTAACTTCAGTCAACTTGACAAACAAGAAAACAATGAAGGGGTGACTGAGAACACAACAACTGAGTAA 576 0.408 MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTVRLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENNEGVTENTTTE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00504 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 186 - -
Cca03g00504 191 CDD LIM1_SF3 7 69 - -
Cca03g00504 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Cca03g00504 191 Gene3D Cysteine Rich Protein 104 174 - -
Cca03g00504 191 Gene3D Cysteine Rich Protein 5 75 - -
Cca03g00504 191 SMART lim_4 10 62 IPR001781 -
Cca03g00504 191 SMART lim_4 109 161 IPR001781 -
Cca03g00504 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Cca03g00504 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Cca03g00504 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Cca03g00504 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Cca03g00504 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Cca03g00504 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Cca03g00504 191 CDD LIM2_SF3 110 170 - -
Cca03g00504 191 PANTHER OS06G0237300 PROTEIN 1 186 IPR045268 GO:0051015
Cca03g00504 191 Pfam LIM domain 11 65 IPR001781 -
Cca03g00504 191 Pfam LIM domain 110 165 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00504 Cca-Chr3 8319870 8323566 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca03g00504 LIM 2.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00504 K09377 - gmx:100500501 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00504 03 8319870 8323566 Cca03g00504 03 8319870 8323566 ECH
Cca11g01873 11 43908640 43912700 Cca03g00504 03 8319870 8323566 PCT