Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00501 ATGCATGGGGGTGGAGGTGAGAAGAGGAAGGGGACTCGGCGCATGTGGAAAGCCCCCTCTCGTGGCGACTCGTCTCTGAACGCCGATGTttcttcttcttcttcttcctcctcgtcCACACTGAAGTCCTTCTGTAAGGACGGTCGGAAAATTATTGTTGGTGATTGTGCTCTCTTCAAACCATCTGAAGATCGTCCTCCGTTTATTGGTATAATTCGTTGTCTGACAATTGGCAAAGAGAACAAACTGAAATTGGGTGTTACTTGGCTTTATCGATCCATTGAAGTGAAACTCAGCAAGGGCGTGCCGTTGGAGGCAGCTCCTAACGAAATTTTCTACACCTTCCATAAGGATGAGATTTATGCTGAATCGCTTCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGTGCTGAACTTCCATCAGGTGTTTCATCGTTTGTGTGCAGGAGGGTTTATGACATTGCGAACAAGTGTTTATGGTGGTTAAATGATAAGGATTATATTAATGATTGTCAAGAAGAAGTAGATCAACTATTATACAGGACTTGTGTAGAAATGCATGCAACAGTGCAGTCAGGTGGTAGATCTCCTAAACCAATGAGTAGTCCAACATCAACATCACAGTTCAAATCTGCTTCAGATAGTGTTCAGAACAGTGCTTCTTCCTTTGCATCTCATATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGCCTGTCAAGCGGGAGCGATCAATAAAAACTGAGGATGGTGATTCTGCTAATGGTAGGCATGATAACAATTTGAAGACTGAGATTGCCAAAATTACAGAAAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATAGATTTAGCGAGCCGGTCATTGCTTGCAGCTGTCATTGCAGCTACGGATAAATTAGATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTATTTGATGAGTGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTATTGGGTCCCGGGATGGTGACAAATCTGTAGAGGAGTTTCTCTTGGTATTGCTTCGGGCACTTGATAAGCTCCCAGTAAATCTTCAGGCTTTGCAGACATGCAACATCGGAAAATCTGTAAATCATTTGCGAACTCATAAAAACACTGAAATTCAGAAGAAAGCAAGAGGTTTAGTTGACACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAAGGATGCAAAGTCTGGTTCTGGTGCCACTGTCCACTGGCCTTCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACACTCAGGTGCTTCATCTGATGTTGCCATGAAGAGTTCAGTTACACAGCTTTCCGCATCCAAAACTGCCTCTGTGAAGATTGTCCAAGGAGAGAATACTACTAGATCTGCATTGACATCTGCCTTTCCAGGGCCTGCTAAATCAGTGCCATCCCCTGCATCTGCGACTGCAAACTTAAAAGATGGACAGCCCCGTATTGCTGCTGTCAGTGGAGGTTCTGAACTTCCCATGGCAAATGCAAGGGAAGAAAAAAGCACTAGTTCTAGTCAATCACACAACAATAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGAGGTCTTTCAGGGAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGATATCTGGAGGTTCTTCACGGCATCGAAAATCTATTAATGGATTTTCAGGTTCAACTCCATCTGGACGTGCAAGGGAAAGTGGATCAAGTAGGAATTCCACCTTGCACAAAAATTTAACTTCAGACAAAATATCTCAACCTGGATTAATGGAAAAAGCACTTGATGGAACTTCTCTTGAGGGGAATACTGCCAAGCTGATTGTTAAAATTCCAAACCAAGGCAAGAGTCCTGCACGAAGTGCCAGTGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCCTCATCTCCTGTCCTTCCAGAGAAGCATGATCAGTTTGATCACGGTTCAAAGGAAAAAAATGACTTTTATCGAGCCAATATTGGCTCAGAAATTAATACTGAATCTTGGCAGAGTAATGATTTCAAAGATGTATTGACTGGCTCTGATGAGGGGGATGGATCACCTGCTGCAGTTACTGATAAAGAGCGCTGCCGGACTGGTGATGATTGTAAAAAAACATTGGAGGTATCAAAAGCTGCTTCCTCATCATCTGGAAATGAAAATAAAGCTGGAAATTTGCAGGATGCTTCTTATAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCGGATGATGTGGGAATGAATCTTCTTGCTAGTGTGGCTACTGGAGAGATACTGAAATCTGAATTGTTAACTCCAGCTGGATCTCCAGAAAGAAATGTTACTGCTGTTGAACAGTCATGCACAGGCAATGGTGTTGTTAAGTCCTCTGAAGAAAATCTTGTCCGGGATGAATGCCACTCAAATAATGGTCTTGAAGGTGAAAATAAAAAACAGGGTTCTGTAACAGGTGATTTAGGGGCAAATGATGAAAACGATTCTGATTTTCGAGCATCCGAAGGGAAAGCTTCAAGAGAGCTAAATAAATGTGTTGATGCATGTGCTATGGATTTGCAACAGGTCACTGAAACTGTTTTAGAAAGCAATGGAAAATTAAATGAAAAACATGTTCCTAGTTCATTGGGTGACCTTCCTGGAAATAATGTTCAAGAAGCTAGAGATGGTGACAGAAGCAAGCAGCTTCGGGAGGATGTTGATCAGGTTGTGAAGGCTGGTGAAGTTATTGATGTTAAGGTCGGCTGTGGTGTGGGAGTTGAGGCAGAAGTAACGGAAAAATTGTCACATATCTCCATTGAAGTGGAAGTACAGAGTGATAACTGTACTGCTGAAGGATCTCGTGGTGGTGGACCCACAGCTAAAAAGCTTCCTAGTGTTCTTATGAAGTCTGATTCGGCAAGAGGAATAGATGAGAATGTACTCCATTCTTCTGGTCCTAGTGTTGATAAGGTTCCTGAAGACTTCACTGAACAGAAATCTGATAAAGCTGATGATGTTGATGCTGAGAATCGTGCTAGTCAGTCTAAAAAGCAAAGAAATGAGTGTGAAAGTGATGCCTTGACAATGCCTGAGAATAGAGGCTTATGTTCTACCGTGACTGCTGTTGCTGCTGAACACGTGGAGGAGAATTTAGAAGCTAAAGAGGTTCATGACCAACATGACAGAGAGGTACTCCCCAAAGACTCCCCTAGTGGCCCATCACAAGAAATGGATAAGCATATTGATCCTAAAGGTTCAAAATTGACTGCCATGGAAGATCAAGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCCGTGTCTGCTGGACCTGTGTCAGATGCAGATGCAAAGGTTGGATTTGATCTAAATGAAAGACTCAATGCAGATGATGTAAAATGTGGTGAGTTCAACAGCATTCCCACATCTGGATCTGGGCCTGCTGGCCGATTGATCAGTCCAGTGCCATTTCCTGCTTTATCTATGTCTTGTGGTATTCCCGCTCCAGTTGCTGTGGCTGCTGCTGCAAAGGGGCCCTTTGTGCCTCCTGAAGATTTATTGAGAAGTAAAGGGGAAATTGGTTGGAAGGGATCAGCTGCCACTAGTGCATTCCGGCCAGCTGAGCCCAGGAAAGTTATGGAAATGCCTCTTGGTACACTAACTACCTGTGTACCTGATGCTGCAGCTGGAAAGCAGAGCCGAGCACCATTGGATATTGACTTGAATGTTGCTGATGAAAGAATTCTGGATGATATTTCTTCTCAAGCTTGTGCTCGTCACACAGATTCTGTGTCTCTTGCAGCCAATGGTCATGATCCTGTATGCAGTAAAATGGCTTCACCTGTTCGCTGCTCTGGAGGGCTCGATCTCGACTTGAACCAAGTGGACGAAGCTTCTGACATTGGTCACTGCTCCACAAGCAGTAATCACAAAATTGATGTGCCAATTATGCAGGTGAAGTCATCATTAGGTGGTCCACCAAATAGAGAGGGGAATGTCCACAGGGACTTTGATTTGAACAATGGACCTTCAGTCGATGAAATCACCACCGAATCCCCATTATTCTCTCAGCATGCCAGGAGCAGTGTGCCATCTCAACCACCTGTTTCTGGACTTCGGGCGAGTACTACTGAGCCAAGCAACTTCTCTTCCTGGCTTCCTTCCAGTGGAAACACTTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGACCAGCCCTTTTCAATTGTTGCCCCAAATGGGCCACACAGGTTGTTGACTCCTGCTGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGGCCCAGTATTGTCATCATCTCCTGCGGTGTCATATGCATCTGCTCCATTTGAATATCCCGTCTTCCCTTTTAATTCCAGCTTTCCTCTTCCATCAGCATCTTTTTCTGCTGGATCAACTACTTATGTATATCCTACATCAGGCAACCGGCTTTGCTTCCCTGCAGTAAATTCTCAGTTAATGGGTCCTGCTGGCACAGTTTCACCTCATTACCCCAGGCATTTTGTTGTTGGGCTTTCAGAAGGTAGCAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGGCAAGGCAGGGTTTAGATCTTAATGCTGGACCCGGAGGTTCAGACATAGAGGGCAGAGATGAGACTTCATCTCTTCAATCCAGGCAACTTTCTGTTGCTAGTTCCCAGGCCCTAGCTGAGGAGCATGCAAGGATCCAGCTGTCTGGTAGTGTTCGCAAGAGAAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4905 0.4416 MHGGGGEKRKGTRRMWKAPSRGDSSLNADVSSSSSSSSSTLKSFCKDGRKIIVGDCALFKPSEDRPPFIGIIRCLTIGKENKLKLGVTWLYRSIEVKLSKGVPLEAAPNEIFYTFHKDEIYAESLLHPCKVAFLPKGAELPSGVSSFVCRRVYDIANKCLWWLNDKDYINDCQEEVDQLLYRTCVEMHATVQSGGRSPKPMSSPTSTSQFKSASDSVQNSASSFASHIKGRKRERADQGSEPVKRERSIKTEDGDSANGRHDNNLKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVIAATDKLDCLSQFVQLRGLPVFDEWLQEVHKGKIGDGIGSRDGDKSVEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKNTEIQKKARGLVDTWKKRVEAEMNIKDAKSGSGATVHWPSKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTASVKIVQGENTTRSALTSAFPGPAKSVPSPASATANLKDGQPRIAAVSGGSELPMANAREEKSTSSSQSHNNSQSCSSDHAKTGGLSGKEDARSSTAMSANKISGGSSRHRKSINGFSGSTPSGRARESGSSRNSTLHKNLTSDKISQPGLMEKALDGTSLEGNTAKLIVKIPNQGKSPARSASAGSFDDPTIMNSRASSPVLPEKHDQFDHGSKEKNDFYRANIGSEINTESWQSNDFKDVLTGSDEGDGSPAAVTDKERCRTGDDCKKTLEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDVGMNLLASVATGEILKSELLTPAGSPERNVTAVEQSCTGNGVVKSSEENLVRDECHSNNGLEGENKKQGSVTGDLGANDENDSDFRASEGKASRELNKCVDACAMDLQQVTETVLESNGKLNEKHVPSSLGDLPGNNVQEARDGDRSKQLREDVDQVVKAGEVIDVKVGCGVGVEAEVTEKLSHISIEVEVQSDNCTAEGSRGGGPTAKKLPSVLMKSDSARGIDENVLHSSGPSVDKVPEDFTEQKSDKADDVDAENRASQSKKQRNECESDALTMPENRGLCSTVTAVAAEHVEENLEAKEVHDQHDREVLPKDSPSGPSQEMDKHIDPKGSKLTAMEDQEAEECTSTTADASSVSAGPVSDADAKVGFDLNERLNADDVKCGEFNSIPTSGSGPAGRLISPVPFPALSMSCGIPAPVAVAAAAKGPFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEMPLGTLTTCVPDAAAGKQSRAPLDIDLNVADERILDDISSQACARHTDSVSLAANGHDPVCSKMASPVRCSGGLDLDLNQVDEASDIGHCSTSSNHKIDVPIMQVKSSLGGPPNREGNVHRDFDLNNGPSVDEITTESPLFSQHARSSVPSQPPVSGLRASTTEPSNFSSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPHRLLTPAAGGNPFGPDIYRGPVLSSSPAVSYASAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSGNRLCFPAVNSQLMGPAGTVSPHYPRHFVVGLSEGSNSGSAETSRKWARQGLDLNAGPGGSDIEGRDETSSLQSRQLSVASSQALAEEHARIQLSGSVRKRKEPDGGWDGYNQSSWQ 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00501 1634 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 283 418 IPR035441 -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 559 617 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1 42 - -
Cca03g00501 1634 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1634 - -
Cca03g00501 1634 Pfam TFIIS helical bundle-like domain 365 414 IPR017923 -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1126 1141 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 191 266 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 24 42 - -
Cca03g00501 1634 SMART TFS2_5 337 416 IPR003617 GO:0005634
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1610 1624 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1 17 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 528 552 - -
Cca03g00501 1634 ProSiteProfiles TFIIS N-terminal domain profile. 340 417 IPR017923 -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 838 872 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 901 932 - -
Cca03g00501 1634 ProSiteProfiles BAH domain profile. 49 164 IPR001025 GO:0003682
Cca03g00501 1634 SMART BAH_4 49 164 IPR001025 GO:0003682
Cca03g00501 1634 MobiDBLite consensus disorder prediction 440 489 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 642 687 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1083 1125 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1006 1057 - -
Cca03g00501 1634 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1634 - -
Cca03g00501 1634 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 319 427 IPR035441 -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 227 266 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 845 860 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1568 1634 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1023 1057 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 195 226 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 706 735 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1083 1146 - -
Cca03g00501 1634 Gene3D - 32 275 IPR043151 -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1583 1600 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 1386 1417 - -
Cca03g00501 1634 MobiDBLite consensus disorder prediction 420 621 - -
Cca03g00501 1634 CDD TFIIS_I 339 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00501 Cca-Chr3 8216037 8223463 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca03g00501 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00501 - - ccaj:109810746 3160.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00501 03 8216037 8223463 Cca03g00501 03 8216037 8223463 ECH