Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00496 ATGCATGAGGAGTTTCTTGAGAATGGAATAGCACATGGTAACTTAAAATCAAGTAACATTTTGTTTGACAAGAACATGGATCCATGCATAAGCGAATATGGGCTAATGATGGCAGAAAATCAAGATCAAATTGTCCTTTCCCACAACAGAAACCTCAAAAACAAAGATCTGATTGCAGCCACCTTCAAAGCTGATATATATGCCTTTGGTATGATACTTCTGGAGCTTCTGACAGGGAAAGTAATTAAAAATGATGGATTTGATTTAGTAAAATGGGTGAATTCAGTGGTCAGAGAGGAATGGACTGTTGAAGTTTTCGACAAGACCCTAATCTCACAAGGTGCTTCTGAAGAAAGGATGATGAAGTTGTTGCAGGTAGCATTAAAATGCGTAAATCCTTCTCCCAATGATAGGCCAAGTATGAGCCAAGTTGCAGTGATGACAAATTCTTTGAAAGAGGAGGAAGAAAAATCCATATCATTTGACACATGA 492 0.378 MHEEFLENGIAHGNLKSSNILFDKNMDPCISEYGLMMAENQDQIVLSHNRNLKNKDLIAATFKADIYAFGMILLELLTGKVIKNDGFDLVKWVNSVVREEWTVEVFDKTLISQGASEERMMKLLQVALKCVNPSPNDRPSMSQVAVMTNSLKEEEEKSISFDT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00496 163 Gene3D Transferase(Phosphotransferase) domain 1 1 162 - -
Cca03g00496 163 Pfam Protein kinase domain 7 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00496 163 PANTHER OS10G0387400 PROTEIN 1 162 - -
Cca03g00496 163 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00496 163 SUPERFAMILY Protein kinase-like (PK-like) 7 147 IPR011009 -
Cca03g00496 163 PANTHER OS05G0588300 PROTEIN 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00496 Cca-Chr3 8114345 8114836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00496 1 155 Receptor kinase-like Gene Family AT2G36570 36.158 2.42e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca03g00496 Pkinase 5.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00496 - - ccaj:109812341 325.094