Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00491 ATGGTGGCAAGATCATGCTTGAATTTGTTGGACCTGGTATCAGGGGATATGCTAAATGCCCCTCAAACTCCCAGATCTCTTCCGCGAGTTATGACTGATCCAGTAATCATGTCTGATGGAGATGGTAAACAAAGTAATGATGATGATGGTTCAAGTATTTTCTCATCAGAACAACGTCGCAAGATAATTATAGTATCAAATTCTCTTCCTCTCAATGCAAAAAGGGATAAAGTATCTGGCAGATGGTCCTTCAGCTATGACGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTCCtgatgctgatgttgtttatgtgggatctctgaatgttgatattgatTCAAGAGAGCAAGAGAAAGTTTCCCTTCAGTTGATGGAGGAATTCAATTGCTTGCCTACTTTTATTCCTTCAGAACTATACAAACAATTCCATGATGGATTCTGCAAACAACAATTGTGGCCTCTATTCCATTACAGGTTGCCCATGTATCCAGGCAATCGCCGCTTTGATAGGTTGCAGTGGCAGGCTTATGTTTCCGCTAACAAGATATTTGCAGATAAAGTGATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTCCTTCCTACATTTCTGCGAAAGCGGTGTAATCGAGTCAGGCTTGGGTTCTTCCTCCACAGCCCCTTTCCTTCATCAGAAATTTACAAAACTTTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTTCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGCCGGCGAATGCTTGGCTTGGAACACGAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGTACAATATTGATTAAAATATTGCCTGCTGGGATTCACATGGGTCGACTTCAATCTGCCTTAGATCACCCTTCCTCATCTATCAAAGTCAGAGAAATTCACCAACAATTTAAGGGGAAAAAGCTTATTGTTGGTGTTGATGATATGGATGTATTCAAAGGTGTTAGTTTAAAATTCTTAGCCATAGAGCAGCTCCTGCAGCAATATCCAGAACTGCAAGGTGAAATAATACTGATCCAAATTTTAAACCCCCCAAGTAGTGCTCACAAAGATGTTGACGATGCAAGGGAGGAGACCTACATTACTGCCAAAAAGATAAATGAAAGGTTTGGCTTGGAAGGTTATGAACCCATCATCATCATTGATAGCCATGTTCCTTTCTATGAGAAAGCAGCTTATTATTCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGTGATGGTTTGAATTTGGTTCCATACAAATACACTGTTTGTAGGCAGGGAAGTTCTAAAATGGATGAAATCTTAGAAATTGGTTCTGATTCCCCACGTTCAAGTGCACTTGTCATCTCTGAGTTCATAGGTTGCTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCTTGGGATATTGATGCAGTAGCTGAAGCACTAAATTTGGCAGTCACAATGCCTGATAGAGAGAAGCAGTTTCGACACGAGAAGCACTATCGATATGTTAGTTCTCATGATGTGGCCTACTGGGCCAGAAGCTTTGAGCAAGATCTAGTGCTCTCATGCAAGGATCAACATAGGAAACGTTGCTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTCTGTCCCTCTCTCCTACTTTCAGGAAGCTATCTATAGAACACATTGTCCCTGCATATAAGAGGAGCAGTTGCAGGGCAATCTTTTTGGATTATGATGGTACCATTGTGCCTCAAGCTTCCATTGCTAAACCCCCCAGTCCTGAAGTCATATCTGTGCTAAATAATCTCTGCAGTGATCTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAACCCTCACTGAGtgaatggtttgatcagtgtgagaatcttggaattgcagctgagcatggttatttcataaggtggggtaaagataccaattggcaaatgagtcatacagatacagattttgcatggaaaaggattgctgaacctgtgatgaaatcttacatggaggccacagatggctcctctgtagagaccaaagagagtgccttggtatggcattaccacgatgccgatcctgattttggatcttggcaagccatggagttgttggatcaccttgaaaatgtacttgcaaatgagcctgtagttgtcaaaaagggacaacacattattgaagtcaaaccgcagggcattactaaagggtcagttgcacaggaagttctttctaccctaaccaagagggataaatccccggattttgtactgtgcattggtgatgatagatctgatgaggatatgtttgagagcatattaaccaaaccttatagtgcttcctcctcatcagtgccagaaatctttgcatgcactgttggacaaaaaccaagcaaagctagatactacctagatgacacggtagatgtgatgacattacttgagGGTCTTGGTACTGCTTCAGGGTCTAAATCAAGATACTCTACAGAAAGCCCTTTTGAAGAAAGAGAAGTATGTTTTGAGAATGATGTTTAA 2601 0.3153 MVARSCLNLLDLVSGDMLNAPQTPRSLPRVMTDPVIMSDGDGKQSNDDDGSSIFSSEQRRKIIIVSNSLPLNAKRDKVSGRWSFSYDEDSIFWQLKDGLSPDADVVYVGSLNVDIDSREQEKVSLQLMEEFNCLPTFIPSELYKQFHDGFCKQQLWPLFHYRLPMYPGNRRFDRLQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCNRVRLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYFGRTILIKILPAGIHMGRLQSALDHPSSSIKVREIHQQFKGKKLIVGVDDMDVFKGVSLKFLAIEQLLQQYPELQGEIILIQILNPPSSAHKDVDDAREETYITAKKINERFGLEGYEPIIIIDSHVPFYEKAAYYSLAECCIVNAVRDGLNLVPYKYTVCRQGSSKMDEILEIGSDSPRSSALVISEFIGCSPSLSGAIRVNPWDIDAVAEALNLAVTMPDREKQFRHEKHYRYVSSHDVAYWARSFEQDLVLSCKDQHRKRCWGIGFGLNFRILSLSPTFRKLSIEHIVPAYKRSSCRAIFLDYDGTIVPQASIAKPPSPEVISVLNNLCSDLNNTVFIVSGRGKPSLSEWFDQCENLGIAAEHGYFIRWGKDTNWQMSHTDTDFAWKRIAEPVMKSYMEATDGSSVETKESALVWHYHDADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIIEVKPQGITKGSVAQEVLSTLTKRDKSPDFVLCIGDDRSDEDMFESILTKPYSASSSSVPEIFACTVGQKPSKARYYLDDTVDVMTLLEGLGTASGSKSRYSTESPFEEREVCFENDV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00491 866 Pfam Glycosyltransferase family 20 61 544 IPR001830 GO:0003824|GO:0005992
Cca03g00491 866 TIGRFAM T6PP: trehalose-phosphatase 592 839 IPR003337 GO:0003824|GO:0005992
Cca03g00491 866 Gene3D Glycogen Phosphorylase B; 53 312 - -
Cca03g00491 866 Gene3D - 591 707 IPR023214 -
Cca03g00491 866 Gene3D - 721 853 IPR023214 -
Cca03g00491 866 CDD HAD_TPP 593 833 - -
Cca03g00491 866 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Cca03g00491 866 CDD GT20_TPS 61 544 IPR001830 GO:0003824|GO:0005992
Cca03g00491 866 SUPERFAMILY HAD-like 592 839 IPR036412 -
Cca03g00491 866 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Cca03g00491 866 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 852 - -
Cca03g00491 866 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 544 - -
Cca03g00491 866 MobiDBLite consensus disorder prediction 34 53 - -
Cca03g00491 866 Gene3D Glycogen Phosphorylase B; 313 529 - -
Cca03g00491 866 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 794 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00491 Cca-Chr3 8030370 8036775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00491 1 864 Trehalose Biosynthesis Gene Families AT1G23870 64.088 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00491 K16055 - gmx:100812031 1615.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00491 03 8030370 8036775 Cca11g01860 11 43772290 43775589 ECH
Cca03g00491 03 8030370 8036775 Cca03g00491 03 8030370 8036775 ECH
Cca11g01860 11 43772290 43775589 Cca03g00491 03 8030370 8036775 PCT