Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00488 ATGAGCAGCGAGTTCTACAGATTCGCAGCGGTTTCATCGCACTTGGGGAACTTGCCGAAATCGTTCTCGCTCCGAAAGAAGGTGCCATGGTGGTACCAAATCCTGGACCCTCGGTCGAAGTTCGTGGCGCAGTGGAACCGCATGTTCCTGTACGTGTGCATCGCAGCGCTGTTCCTGGACCCTCTCTACTTCTACTTCCCCATCACGGGGGACCAAGCCTGCATGCAGACCGACATCACGCTCGGCATCTTCGTCACCTTCTCCCGCACCGTCGCTGACCTCTTCTTCGTCTTCCACATGTTCCTCAAGTTCCGCACCGCCTTCATCTCTCCCAATTCCCGCGTCTATGGCCGCAAAGAACTCGTCACTGATCCTCACCAAATCGCCTCCCGCTACCTCAAGTCTAACTTCATCATTGATCTCCTCGCCACCCTCCCTCTCCCTCAGacagtggtttggctcgtgattccgtcactaaaaaattcaacggtggctcatgtaaatcacaccctgtccttgattgtcctcattcagtttattcctcggttgtttcagatttttcctctgcaacggagaatcttgaagactagtggcctcattgccaaaactgccttggcaggggctttatacaatcttggttcctacatgctagccagccatgttttaggagcttcatggtacgtgtcatcaattcagcgtcagtacgagtgttggagaatcacatgcaaaAAGGAGATGAACAGAACGCACTCTCCATCTTGTAATCCTTCTTTTCTGGACTGTGGTACCATGCTACAACGCGAGAGGCAAGCTTGGTTCAAACGCACCAGACTTCTCACCAACTGCGATGCCCTCAACGATAAAAACCAGTTTCAGTTTGGAATGTTCGCTGACGCTTTCACTGATCACGTCTCTTCAGCCCATTTCTTCCAAAAGTACTTTTACTGCCTCTGGTGGGGTTTGAAGAATCTAAGTTCATATGGACAGAATCTTCAAACTAGCACTTACAGTGGTGAAACATTATTTTCGAGTTTCATATGCATCGCTGGTCTTATTCTGTTTGCTCATCTCATTGGTAACATGCAGAATTATCTGCAATCTAACACTGCAAGAGTAGAAGAGTGGAGACTTAAACAGAAAGACACAGAAGAGTGGATGAATCACAGGCAGCTTCCACCAGAATTGCAACAACGTGTTCGCCGATTTGTTCAATATAAATGGCTTGCCACGAGAGGAGTAGATGAAGAAGCCATTTTGCGTGCTTTGCCTTTGGACATTCGACGCCAGATTCAGAGGCATCTCTGTCTTGACATTGTTCGTCGGGTCCCATTTTTTGGTCAAATGGACGACCAACTTCTAGACGCGATATGTGAACGCCTGGTTTCATCCTTGAACACAAAAGACACGTACGTGGTTCGTGAGGGTGATCCCGTGAGAGAAATGCTTTTCATCATTAGGGGCCAAGTAGAGAGTTCCACAACCGATGGTGGCAGAACAGGGTTCTTCAACTCCATCACTCTCAGACCCGGTGACTTCTGCGGCGAAGAATTGCTAACTTGGGCCTTGATGGCCACTTCAAGTCTCAACCTTCCATCCTCCACTCGAACGGTGAAGACCATCACCGAAGTCGAGGCATTTGCTCTCAGAGCCGAGGACCTCAAATTCGTGGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTGCAACATGCTTTCAGGTACTACTCGCATCAGTGGAGAGCTTGGGGTGCTAACTTCATACAAGCTGCATGGAGACGCCACCGCAAGAGAAAGTTGGCAAtggagttgttggacaaagagaacttgtactactcgaacgtggtggagatagaagaagaggaagttgatgaagaagaagctcgtgctgctgggagttcaattGGGACTACTCATTTTCAGAATCTTGGGGCTACGGTTTTGGCTTCGAGATTTGCTGCAAACACTAGGAAAGGAATGGTTAGAAAGGTTACTATTAAGATTCCTGATGCTGGCAATTTGAAGATGCCCAAGATGTTCAAGCCAACGGAACCTGATTTCTCAACATTCCAAGATTAG 2076 0.3988 MSSEFYRFAAVSSHLGNLPKSFSLRKKVPWWYQILDPRSKFVAQWNRMFLYVCIAALFLDPLYFYFPITGDQACMQTDITLGIFVTFSRTVADLFFVFHMFLKFRTAFISPNSRVYGRKELVTDPHQIASRYLKSNFIIDLLATLPLPQTVVWLVIPSLKNSTVAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGASWYVSSIQRQYECWRITCKKEMNRTHSPSCNPSFLDCGTMLQRERQAWFKRTRLLTNCDALNDKNQFQFGMFADAFTDHVSSAHFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSNTARVEEWRLKQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDIRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYVVREGDPVREMLFIIRGQVESSTTDGGRTGFFNSITLRPGDFCGEELLTWALMATSSLNLPSSTRTVKTITEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGANFIQAAWRRHRKRKLAMELLDKENLYYSNVVEIEEEEVDEEEARAAGSSIGTTHFQNLGATVLASRFAANTRKGMVRKVTIKIPDAGNLKMPKMFKPTEPDFSTFQD 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00488 691 Pfam Cyclic nucleotide-binding domain 467 555 IPR000595 -
Cca03g00488 691 ProSiteProfiles cAMP/cGMP binding motif profile. 444 574 IPR000595 -
Cca03g00488 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 689 - -
Cca03g00488 691 Gene3D - 48 367 - -
Cca03g00488 691 CDD CAP_ED 444 575 IPR000595 -
Cca03g00488 691 Gene3D Jelly Rolls 442 562 IPR014710 -
Cca03g00488 691 SMART cnmp_10 444 575 IPR000595 -
Cca03g00488 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 10 689 - -
Cca03g00488 691 SUPERFAMILY Voltage-gated potassium channels 36 366 - -
Cca03g00488 691 Pfam Ion transport protein 45 372 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca03g00488 691 Gene3D Helix hairpin bin 370 435 - -
Cca03g00488 691 SUPERFAMILY cAMP-binding domain-like 373 569 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00488 Cca-Chr3 7967208 7973148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00488 11 686 Ion Channels AT3G48010 64.419 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00488 K05391 - gmx:100783672 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00488 03 7967208 7973148 Cca03g00488 03 7967208 7973148 ECH