Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00487 ATGGCAACTCGTAGATTTTCATGCCTCCTCTCTCGCTCTCTATCGGCTTCTCTACTTCACTCACTTGGGAAAAACTCTAGCAAGTGGGGAAACGTTAACAGATTCAGCACTGCAGCAGCAGTTGATGAATTAGTCACTCCACAAGTTCCAATAACATACACAAAGCATATGATAAATGGACAATTTGTGGACGCTGCATCAGGGAAAACCTTTCCAACATATGACCCCCGCACAGGAGAAGTGATTGCTCAAATTGCTGAAGGTGATGCAGAAGATATCAACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGACCTTGGCCAAAAATGACAGCTTACGAAAGATGTAAGATAATTCTACGCTTCGCTGATTTGGTTGAGAAACACAGTGATGAAATTGCAGCGCTTGAGACATGGAACAGTGGAAAGACTTATGAACAGTGTGCCAATTCTGAATTACCATTATTTGTGCGTTTGTTTCATTACTATGCTGGTTGGGCAGATAAAATCCATGGCCTGACAGTGCCTGCTGATGGAAATTATCATGTGGAGACATTGCATGAGCCAATTGGTGTTGCAGGACAAATTATACCTTGGAACTTTCCTCTCATCATGTTTGCTTGGAAAGTTGGACCAGCTCTTGCAACTGGAAATACTGTCATCCTTAAGACTGCTGAACAAACACCTTTAACAGCTCTCTATGTGGCAAAACTATTTCATGAGGCTGGTCTTCCACCAGGTGTTTTGAATATAGTTTCTGGCTATGGTCCAACTGCTGGTGCAGCTCTTGCAAGTCACATGGATGTTGACAAGCTAGCATTCACCGGATCTACCGAGACTGGAAAAATTGTACTTGAATTGGCCGCAAAAAGCAATCTTAAGCCTGTGACATTGGAGCTTGGTGGGAAATCACCTTTCATAGTGTGTGAGGATGCTGATGTTGACCAGGCTGTAGAACTTGCGCACTTTGCTCTGTTCTTTAACCAGGGGCAATGTTGCTGTGCTGGGTCTCGTACCTTTGTACATGAACGTATCTATGATGAGTTCTTGGAGAAATCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGGGATCCCTTCAAAAAGGGTGTCGAACAAGGACCTCAGATTGACGTGGAACAATTTCAGAAAGTCCTTAGGTACATAAAGTCTGGTATTGAAAGCAACGCTACCCTTGAATGTGGTGGTGACAGAATTGGTTCAAAAGGATTCTTTGTCCAACCTACTGTCTTCTCAAATGTTCAGGATGACATGTTGATAGCAAAAGATGAAATCTTTGGCCCAGTTCAATCCATCTTGAAGTTCAAGGACATTGAGGAAGTAATTCGAAGGTCAAATGCAACGCGTTATGGTCTAGCTGCAGGTGTCTTCACTAAGAACGTGCACACAGCCAACACTTTGATGCGAGCACTGAGGGTTGGAACTGTGTGGATTAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGTGGCATTGGCAGGGAGAAGGGAATTTACAGTCTCAACAATTACCTGCAAGTTAAAGCTGTGGTTTCACCATTGAAGAATCCTGCATGGCTCTTAAGCACCGTTGCAGAAATTGATGATCTAGTCACACCACCTGTGGAAATAAGATACACTAAAAATCTAATAAATGGGGAGTTTGTGGATGCTGTGTCAGGAAAAACATTTCCTACATATGACCCGCGAACTGGGGAAGTGATTGCTAACGTTGCTGAAGGTGACCAAGAAGATATCAATCGTGCAGTGTCTGCAGCTCGAAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACCCCTTATGAAAGATCACGAGTACTATTGCGCATTGCTGATATGATTGAGAAACACAGTGATGAGCTTGCAACACTGGAAACATGGAATAATGGCAAGCTTTATGAACAGGCAGCCAAAATTGAATTACCATTGGTTGTACGTCTGCTTCATTACTATGCTGGTTGGGCAGATAAAATTCATGGTGTCACGGTTCCGGCTGATGGGAATTATCATGTACAAACATTGCATGAACCAATTGGGGTTGCAGGGCAAATCATACCTTGGAACTTTCCTCTATTGCTGTTTGCTTTCAAAGTTGGACCTTTGACTGGTTTATTTGCTGCACAGCTATTTCTTGAGGCTGGTCTTCCACCAGGGGTCCTAATTGTGTCTGGTTTTGGTCCAACTGCTGGTTCTGCTCTTGCTGGTCATATGAATGTGGACAAGCTCGCTTTCACTGGATCAACTGAGACAGGAAAAATCATATACGAACTGGCTGCGAAGAGCAATCTTAAGGCTGTGACACTGGAACTAGGAGGAAAATCACCATTCATAGTGTGTGAGGATGCTGATGTTGACAAGGCCGTGGAACTTGCACACTTTGCTCTTTTCTTCAATCAGGGCCAATGCTGTTGTGCCGGGTCACGTACTTACGTGCATGAACGAAAATACGATGAGTTTTTGGAGAAAGCAAAGGCTATGGCTTTGAGACGTGTTGTCGGTGATCCATTCAAGAAAGGCGTGGAACAAGGACCTCAGATTGATTCAGAACAGTTTGAGAAAATCCTACGATACATAAGGTCAGGTATTGAATCCAACGCTACTCTGGAATGTGGCGGTGAGAGAATTGGCACAAAAGGCTTCTTTGTCCAACCAACAGTCTTCTCAAGTGTTAAGGATGATATGCTGATAGCTAAAGATGAGATCATTGGCCCAGTCCAAACCATACTAAAATTCAAGGACACTTCTGAAGTCATAAGAAGAGCAAACACAACACGTTATGGTCTTGCAGCTGGTGTGTTCACAGAGAATTTGGACACGGCTAATACGATGATGCGGGGACTAAGGGCAGGAACAGTGTGGATTAATTGCTTCAATGTTTTTGATGCTGCAATCCCTTTTGGAGGGTACAAGATGAGTGGGTTGGGCAGGGAGAAGGGTATCTACAGTCTCACGACTACTTGCAGGAAGATAATGTTCTTGTTTGTGATTAATGATAAGGATGAGATCTAG 3051 0.4372 MATRRFSCLLSRSLSASLLHSLGKNSSKWGNVNRFSTAAAVDELVTPQVPITYTKHMINGQFVDAASGKTFPTYDPRTGEVIAQIAEGDAEDINRAVSAARKAFDEGPWPKMTAYERCKIILRFADLVEKHSDEIAALETWNSGKTYEQCANSELPLFVRLFHYYAGWADKIHGLTVPADGNYHVETLHEPIGVAGQIIPWNFPLIMFAWKVGPALATGNTVILKTAEQTPLTALYVAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKARALKRVVGDPFKKGVEQGPQIDVEQFQKVLRYIKSGIESNATLECGGDRIGSKGFFVQPTVFSNVQDDMLIAKDEIFGPVQSILKFKDIEEVIRRSNATRYGLAAGVFTKNVHTANTLMRALRVGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVKAVVSPLKNPAWLLSTVAEIDDLVTPPVEIRYTKNLINGEFVDAVSGKTFPTYDPRTGEVIANVAEGDQEDINRAVSAARKAFDEGPWPKMTPYERSRVLLRIADMIEKHSDELATLETWNNGKLYEQAAKIELPLVVRLLHYYAGWADKIHGVTVPADGNYHVQTLHEPIGVAGQIIPWNFPLLLFAFKVGPLTGLFAAQLFLEAGLPPGVLIVSGFGPTAGSALAGHMNVDKLAFTGSTETGKIIYELAAKSNLKAVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHERKYDEFLEKAKAMALRRVVGDPFKKGVEQGPQIDSEQFEKILRYIRSGIESNATLECGGERIGTKGFFVQPTVFSSVKDDMLIAKDEIIGPVQTILKFKDTSEVIRRANTTRYGLAAGVFTENLDTANTMMRGLRAGTVWINCFNVFDAAIPFGGYKMSGLGREKGIYSLTTTCRKIMFLFVINDKDEI 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00487 1016 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 300 307 IPR029510 GO:0016491
Cca03g00487 1016 CDD ALDH_F2BC 51 525 - -
Cca03g00487 1016 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 493 IPR016163 GO:0016620
Cca03g00487 1016 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 786 975 IPR016163 GO:0016620
Cca03g00487 1016 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 58 522 IPR016162 GO:0016491
Cca03g00487 1016 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 536 998 - -
Cca03g00487 1016 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 782 789 IPR029510 GO:0016491
Cca03g00487 1016 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 22 534 - -
Cca03g00487 1016 SUPERFAMILY ALDH-like 549 999 IPR016161 GO:0016491
Cca03g00487 1016 SUPERFAMILY ALDH-like 48 527 IPR016161 GO:0016491
Cca03g00487 1016 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 22 534 - -
Cca03g00487 1016 Pfam Aldehyde dehydrogenase family 62 524 IPR015590 GO:0016491
Cca03g00487 1016 Pfam Aldehyde dehydrogenase family 563 1000 IPR015590 GO:0016491
Cca03g00487 1016 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 810 821 IPR016160 GO:0016491
Cca03g00487 1016 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Cca03g00487 1016 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 558 999 IPR016162 GO:0016491
Cca03g00487 1016 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 536 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00487 Cca-Chr3 7941862 7965069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00487 536 999 Aldehyde Dehydrogenase Gene Family AT3G48000 73.651 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00487 K00128 - gmx:100811501 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00487 03 7941862 7965069 Cca11g01857 11 43698957 43703763 ECH
Cca03g00487 03 7941862 7965069 Cca03g00487 03 7941862 7965069 ECH