Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00486 ATGGCTCCTAACAATCCAACGGCGGAGCACCGCCGCCCCCTGTCGTTCCCCGCCGTGCGCCCCTGCGCCGCCATCTCCCCCGCCACCCTCCTGGCCTCCCTCATCACCCTAACCCAAACCATCTCCGCCCAATTCCACCCCGATTCCCTCGCCACCCAGCGCCGCAACGCCGCCGAAGCCATGCGACAAATCAACATCCTCCTCGTCCTCTTCCAAGAGCTCCACGACGGCGCCGCCTTCGCCGTCCCCCACCCCTGCCTCGCCGACCTCCACGTCACCCTCCAGAAAATCCGCTTCCTCATGCACGACTGCGCCCGCGACGGCGCGCGGCTCCTCATGCTAGCCAAATCGCGCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCATCCGCGCCGTCGCCGCCTCCCTGGACACGCTACCCCTCCGCGGAATCGACATCACCGGCGAGGGTCGTCATATTCGAGAATTCAGATTATCTTCAATGTGGAACAACAACCGAAGAATCCGAAGAGGACCACGACATGGAGACATTAACCTGCGTGGTTCCTGAAGATTTCCGATGTCCGATTTCTCTTGAGATAATGACCGACCCTGTCACTATTTCCACCGGCCAAACATACAACCGAGACTCCATTACCAAATGGTTCAAACAAGGTAACATGATATGCCCCAAAACGAGAGAGAGGGTTACAAACACAGAATTATTCCCCAACGCAGCGCTCAAGAAGCTTATCCAACAATTCTGTTGGAAAAACGGGGTCACGTATGGGAACTCGACCaacccgaacccgagccaccgaaccggaatcagaaccAGCGAGGCGGGGAGTCCTGCGGCGGCGCACGCCATGCAGTTTCTGTCGTGGTTTATCTCACGGAGGCTGGTGTTTGGAACCGAGGAACAGAAAAACAAAGCCGCGTACGAGATTCGTTTGTTGGCCAAGTCGAACGTTTTCAACAGGGTGTGTCTGGTTGAAATGGGAACGGTGGGGCCGCTGTTGGATCTTCTGGCCACGGAGGAAACCACCGCGCAAGAGAACGCGATCAACGCTTTGATGAAACTCGCAATGCATAAAAGCGGTCTACAAGTCATCGTGGAGAGTCGAGGGTTGGTGCCCATTGTGCATGTGCTGAAAAGAGGGCTAAGTCCAGAGTCTCGCCACGTGGCAGCTGTTATTATATTTTACCTTTCCTCCGTGAAAGAGTACAGAAAGTTGATGGGGGAGAAAAATGAGGTTATTCCGGCGCTGGTGGAGATGGTCAAGGAAGGAACAATCTCCGAGAAACGCAACGCGGTGGTTGCCATCTTCGGGCTTCTCTTCCGCCGGAAGAATCACCCCAAGGTGCTGGCCGCGGGTGCGGTTCCTGCGCTTGTTAATATCTTAGCTTCTTCTTCTTCGGATAAACGTGATCTCGTGACCGATTCTTTGGCGGTTCTCGTGGCGTTGGTGGAGAAGGTTGAAGGTGCTCGCGCTGCTTTTAGAGCCAAAGCGTTGCCGTTGGTGACCGGGATCTTGCAATCCACTACGTCGCGCGCGGGGAAGGAGTACTGCGCCTCCATTTTGCTGGCATTGTGCGTCAATGTTGGTGCAGAAGTGACCAGTGTTGTTTCCAAGGACGCTTCCATTATGCCCTCGCTTTATAAGCTCATTACCGATGGTACTCCTCACGCGGCCAAGAAAGCGCGTTCCTTAATCAAAGTTGTGCTGGACTTCAGCGAGAAGAGCTATTCTCATGAGAAGAACGTGAAGCCACTCCCTATGTTAACCAACAGAGCGTCAATGACATGGTGGGGATCTAAGTCATGGTGCGGCACAGAAATCAAGATAGAGAATCCACGGTCCAGATTTTTGCTGTGCGTGTTTGCAAATGTTTTAGAGGCAACTTTGAAGTGA 1977 0.5073 MAPNNPTAEHRRPLSFPAVRPCAAISPATLLASLITLTQTISAQFHPDSLATQRRNAAEAMRQINILLVLFQELHDGAAFAVPHPCLADLHVTLQKIRFLMHDCARDGARLLMLAKSRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSAPSPPPWTRYPSAESTSPARVVIFENSDYLQCGTTTEESEEDHDMETLTCVVPEDFRCPISLEIMTDPVTISTGQTYNRDSITKWFKQGNMICPKTRERVTNTELFPNAALKKLIQQFCWKNGVTYGNSTNPNPSHRTGIRTSEAGSPAAAHAMQFLSWFISRRLVFGTEEQKNKAAYEIRLLAKSNVFNRVCLVEMGTVGPLLDLLATEETTAQENAINALMKLAMHKSGLQVIVESRGLVPIVHVLKRGLSPESRHVAAVIIFYLSSVKEYRKLMGEKNEVIPALVEMVKEGTISEKRNAVVAIFGLLFRRKNHPKVLAAGAVPALVNILASSSSDKRDLVTDSLAVLVALVEKVEGARAAFRAKALPLVTGILQSTTSRAGKEYCASILLALCVNVGAEVTSVVSKDASIMPSLYKLITDGTPHAAKKARSLIKVVLDFSEKSYSHEKNVKPLPMLTNRASMTWWGSKSWCGTEIKIENPRSRFLLCVFANVLEATLK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00486 658 ProSiteProfiles U-box domain profile. 208 282 IPR003613 GO:0004842|GO:0016567
Cca03g00486 658 PANTHER U BOX DOMAIN-CONTAINING 7 119 - -
Cca03g00486 658 PANTHER U BOX DOMAIN-CONTAINING 176 610 - -
Cca03g00486 658 SUPERFAMILY ARM repeat 325 597 IPR016024 -
Cca03g00486 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 283 IPR013083 -
Cca03g00486 658 Pfam U-box domain 209 278 IPR003613 GO:0004842|GO:0016567
Cca03g00486 658 Gene3D - 292 612 IPR011989 -
Cca03g00486 658 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 7 119 - -
Cca03g00486 658 SMART Ubox_2 212 275 IPR003613 GO:0004842|GO:0016567
Cca03g00486 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 480 525 IPR000225 GO:0005515
Cca03g00486 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 397 IPR000225 GO:0005515
Cca03g00486 658 CDD RING-Ubox_PUB 213 255 IPR045210 -
Cca03g00486 658 MobiDBLite consensus disorder prediction 150 169 - -
Cca03g00486 658 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 176 610 - -
Cca03g00486 658 SUPERFAMILY RING/U-box 198 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00486 Cca-Chr3 7914096 7916913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00486 197 611 U-box Gene Family AT1G10560 39.286 9.91e-87 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00486 - - gmx:100810963 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00486 03 7914096 7916913 Cca11g01856 11 43684310 43686785 ECH
Cca03g00486 03 7914096 7916913 Cca03g00486 03 7914096 7916913 ECH