Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00484 ATGAAGGAAGCTAGTGATGGGTTCGTCAGGGCGGATCAGATTGATCTCAAGAGCATCGATGAGCAGCTCGAGCGCCACCTCAGCAAGGTGCTCATGAAGCAGAAGGAGGACGACGATTCCGCCTCTGATCATGCTCGTCACTCTAGCTCCTTTGCCACCGCCGCTAAGTTCAAAGGTGTCGCCGGAACTGCTGCTTCTGGCGGTGCTCCCACCTTCAAGAAGCAGCGCCAGGACTGGGAAATTGACCCTTCTAACCTCATCATCAAGAGTGTCATAGCTCGCGGCACTTTCGGCACTGTCCACCGTGGCATCTACGATGGCCAAGATGTTGCCGTTAAAATGCTGGACTGGGGTGAAGAGGGGCACCGGACAGAGGCTGAAATTAATGCACTCAGGTCGGCATTTACGCAAGAAGTTGCTGTTTGGCATAAACTTCAACATCCTAATGTCACAAAGTTTATAGGGGCGACAATGGGGTCTTCAGAATTACAGATACAGACTGACAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTACGCTGAAATCTTTCCTAATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAGGTTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACGCGCACTGTTAAAATTGCTGATTTTGGGGTTGCTCGTGTTGAAGCGTCAAATCCTAATGACATGACTGGGGAGACTGGTACCCTTGGTTACATGGCTCCTGAGGTTCTGAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTGTGGGAAATATATTGTTGTGACATGCCATATCCTGACTTAAGTTTCTCAGAGATTACTTCAGCTGTTGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAAGTGCTGGGATGCCAATCCCGATAAACGGCCGGAAATGGACGAGGTAGTTTCATTGCTGGAAGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTGGATCAGCAGCAGGGTTGTTTTTGCTTCCGTAAGCACAGAGGACCTTGA 1170 0.4778 MKEASDGFVRADQIDLKSIDEQLERHLSKVLMKQKEDDDSASDHARHSSSFATAAKFKGVAGTAASGGAPTFKKQRQDWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEINALRSAFTQEVAVWHKLQHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGTLKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKVVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDANPDKRPEMDEVVSLLEAIDTSKGGGMIPVDQQQGCFCFRKHRGP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00484 389 PRINTS Tyrosine kinase catalytic domain signature 183 196 IPR001245 GO:0004672|GO:0006468
Cca03g00484 389 PRINTS Tyrosine kinase catalytic domain signature 221 239 IPR001245 GO:0004672|GO:0006468
Cca03g00484 389 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Cca03g00484 389 PRINTS Tyrosine kinase catalytic domain signature 331 353 IPR001245 GO:0004672|GO:0006468
Cca03g00484 389 CDD STKc_MAP3K-like 92 360 - -
Cca03g00484 389 Gene3D Transferase(Phosphotransferase) domain 1 187 378 - -
Cca03g00484 389 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00484 389 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00484 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 383 - -
Cca03g00484 389 Gene3D Phosphorylase Kinase; domain 1 74 169 - -
Cca03g00484 389 Pfam Protein tyrosine and serine/threonine kinase 88 360 IPR001245 GO:0004672|GO:0006468
Cca03g00484 389 SUPERFAMILY Protein kinase-like (PK-like) 72 360 IPR011009 -
Cca03g00484 389 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 383 - -
Cca03g00484 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00484 Cca-Chr3 7863196 7868420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00484 6 389 MAP Kinase Kinase Kinase AT3G22750 63.918 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca03g00484 PK_Tyr_Ser-Thr 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00484 - - gmx:100809898 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00484 03 7863196 7868420 Cca11g01854 11 43668209 43673774 ECH
Cca03g00484 03 7863196 7868420 Cca03g00484 03 7863196 7868420 ECH