Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00483 ATGAAGAAGAGATCAGCCACCACCAACAATGATTCCTCTAAACTTGATCGCAAAACCATCGAAAGGAACCGCAGAATTCAAATGAAATCTCTCTGCCTTCAACTCGCTTCTCTTGTTCCTCCCAACCATAAACCATCCAAGTCCAAGTTGATGGTAGGGCAGCATGATCAGCTGGATCTTGCAGCGAGGTATATAAAACACATGAGAGAGAGAATAGAGAAACTGAAGAGGCAGAAGGAGCAAGCTATGTCAACAAAGCAAAGCAATGATCGGAGAACGTTGAATAATAACGTTGATTACAAATTGCCGGTACTAGAGCTAAGAGACTTGGGTTCGGGGATCGAAGTGGTGTTGGTGAGTGGTTTGAACAAGACATTCATGTTATACGAAGTTATTAGAGTTCTTGAGGAAGAAGGCGCTGAAGTTGTCACTGCAAGCTTCTCAACTGTCGGCAACAAAATCTTTTACTTTGTTCATGCTCAGGTTAAAATATCAAGAGTGGGAGTGGAGACCACAAGGGTATATGCTAGACTTCAGGAGTTTATTGCTCCTCTAGAAATTTGGGCTGAAGACGTTTGA 579 0.4266 MKKRSATTNNDSSKLDRKTIERNRRIQMKSLCLQLASLVPPNHKPSKSKLMVGQHDQLDLAARYIKHMRERIEKLKRQKEQAMSTKQSNDRRTLNNNVDYKLPVLELRDLGSGIEVVLVSGLNKTFMLYEVIRVLEEEGAEVVTASFSTVGNKIFYFVHAQVKISRVGVETTRVYARLQEFIAPLEIWAEDV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00483 192 SMART finulus 18 74 IPR011598 GO:0046983
Cca03g00483 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 87 IPR036638 GO:0046983
Cca03g00483 192 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00483 192 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Cca03g00483 192 Gene3D - 3 97 IPR036638 GO:0046983
Cca03g00483 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 183 IPR015660 GO:0003700|GO:0006357
Cca03g00483 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
Cca03g00483 192 PANTHER TRANSCRIPTION FACTOR BHLH162 9 183 - -
Cca03g00483 192 Coils Coil 58 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00483 Cca-Chr3 7800832 7803236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00483 5 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.638 1.32e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00483 HLH 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00483 - - gmx:100790403 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00483 03 7800832 7803236 Cca11g01853 11 43640945 43642221 ECH
Cca03g00483 03 7800832 7803236 Cca03g00483 03 7800832 7803236 ECH
Cca11g01853 11 43640945 43642221 Cca03g00483 03 7800832 7803236 PCT