Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00480 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTCGATGGCTTTTTCTTGTCCATGCTTGCCGCCAGCATAGCTATTGTTGCAATTAATTGGAAGCGTTACCAATCTTGTAGATACCCTTTGCACATATGGATTGTGGTTGACTACGCTACTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCCACAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTACTTTCAATCCTTGCATTACTTCTCTATCCATTTCTTTGGGCCTGGACAATAATTGGTAGCCTGTGGTTCAGCAACACTAAAGTCTGCTTGCCTGGAGGGGGGCAGAAATGGGGCTTCCTTATCTGGTTAGTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCATGGCAATGGGGAAGGTTAGTGGTGCTGTGGGTGTTTCTATGACTTATTCTCATTTTCCATGCTACAAAACTTTTTTCTTTTCTGCATGTGATGCTTTTCTTGTTTATGGTCGACCTATCAACTGCACATGTCTGCAGAAAAATAGTAGTCTCCTTCATTATTTCTTGTATGTACTTCTCTTTTGTTTTCACTTTGGTTTGTTTAATTGTCTTCAGTGGTTGAAACGAAGACAAGCACACTTGTTAGGTGCTCAAGAGGGCATCCCTGTATCTTCATTTGGGGTTGTAGTTGAAATGATCCGAGTACCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGAGCATGGCCCAAGATGCTGCCTATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCATCGTTCAGGTTAAATGCTATTCCTACTAATTGCAGTGAATGCCTCATCTGTTTAGAAGAGTTCCATGTAGGGAATCAGGTCCGTGGCCTGCCCTGTGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGTTGCTCAGTATTTCCGAATCTTGATCTAAGTGCTCTGTCTAACATCCGCACCGAGTCTGAACAGTCTTCTGCCACTGCTGTGACGAGCAGACATGTGACAGACCAAGCTTCTAGTCAGAGTTATCTGTTGAGATTACAAGGGATTCTCCGCCCAGTATGTGCTGAAATTGCTGGACCAGTTGGTGAGACAGACAACGCTTTGGATAATGCTGAAAATGGTGTTGGATCTGTTGTGACTCCTAATATTTCAACTCGAGATCAGGCCACTTCTGTTACTCTCTCATCTGCACAAAGTTAG 1323 0.4376 MAIRGVNFKWFDGFFLSMLAASIAIVAINWKRYQSCRYPLHIWIVVDYATVFTFRLLMFVDNGLASGMGLDFGWPQRYARFCGRVVVLSILALLLYPFLWAWTIIGSLWFSNTKVCLPGGGQKWGFLIWLVFSYCGLLCIACMAMGKVSGAVGVSMTYSHFPCYKTFFFSACDAFLVYGRPINCTCLQKNSSLLHYFLYVLLFCFHFGLFNCLQWLKRRQAHLLGAQEGIPVSSFGVVVEMIRVPDWAFEAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELPSFRLNAIPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRTESEQSSATAVTSRHVTDQASSQSYLLRLQGILRPVCAEIAGPVGETDNALDNAENGVGSVVTPNISTRDQATSVTLSSAQS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00480 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 149 IPR044793 GO:0004842|GO:0010182
Cca03g00480 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 197 426 IPR044793 GO:0004842|GO:0010182
Cca03g00480 440 SMART ring_2 301 341 IPR001841 -
Cca03g00480 440 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Cca03g00480 440 Pfam Ring finger domain 300 342 IPR001841 -
Cca03g00480 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 347 IPR013083 -
Cca03g00480 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 149 - -
Cca03g00480 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 197 426 - -
Cca03g00480 440 SUPERFAMILY RING/U-box 282 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00480 Cca-Chr3 7722132 7728247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00480 197 425 C3H Transcription Factor Family AT3G47990 60.684 3.13e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00480 K16284 - ncol:116261587 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00480 03 7722132 7728247 Cca03g00480 03 7722132 7728247 ECH
Cca11g01851 11 43613709 43620064 Cca03g00480 03 7722132 7728247 PCT