Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00477 ATGAAGAACTTGAAGTGGCACAAGCAAATTTCCAACAGTGGCAAGTTGGGGAGAAGGCTTTCACTTGGGGAGTATAACCGTGCAGTGTCATGGTCTAAGTATCTTGTGTCTCCTGGGGCTGAGATAAAGGGAGAAGGAGAAGAGGAATGGAGTGCAGATATGTCTCAGTTGCTCATTGGATCCAAATTTGCTTCTGGCAGGCACAGCAGAATCTATAGAGGAGTTTACAAGCAGAAGGATGTGGCAATTAAGCTCATAAGTCAACCTGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTCACTTCTGAGGTTTCCTTGCTCCTAAGATTAGGCCACCCAAATATTATTACTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATTACTGAATATTTGGCTGGTGGTTCAGTGGGAAAATTCCTGCATCACCAACAACCAGATATACTTCCACTCAAACTTGTTCTGAAATTAGCCCTTGACATTGCAAGGGGGATGCAATATCTTCATTCTCAAGGGATTCTCCATAGGGACCTCAAATCAGAGAATCTCCTTCTCGGGGAAGACATGTGTGTAAAAGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGCAGTGCAAAAGGATTCACCGGAACATACCGTTGGATGGCGCCCGAAATGATCAAAGAAAAGCATCATACCAAGAAAGTAGATGTGTATAGTTTTGGCATAGTTCTATGGGAGCTTTTGACAGGAAAAACTCCATTTGACAACATGACACCAGAGCAGGCAGCATTTGCAGTTTCCCATAAGGTTTGCATCAGAATTTACTAA 837 0.4289 MKNLKWHKQISNSGKLGRRLSLGEYNRAVSWSKYLVSPGAEIKGEGEEEWSADMSQLLIGSKFASGRHSRIYRGVYKQKDVAIKLISQPEEDEDLAAFLEKQFTSEVSLLLRLGHPNIITFIAACKKPPVFCIITEYLAGGSVGKFLHHQQPDILPLKLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGKTPFDNMTPEQAAFAVSHKVCIRIY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00477 278 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cca03g00477 278 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cca03g00477 278 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cca03g00477 278 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cca03g00477 278 ProSiteProfiles Protein kinase domain profile. 57 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00477 278 Pfam Protein tyrosine and serine/threonine kinase 59 270 IPR001245 GO:0004672|GO:0006468
Cca03g00477 278 PIRSF ILK 29 276 - -
Cca03g00477 278 SMART serkin_6 57 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00477 278 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Cca03g00477 278 CDD STKc_MAP3K-like 64 272 - -
Cca03g00477 278 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 273 - -
Cca03g00477 278 SUPERFAMILY Protein kinase-like (PK-like) 48 272 IPR011009 -
Cca03g00477 278 PANTHER SERINE-THREONINE PROTEIN KINASE 1 273 - -
Cca03g00477 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cca03g00477 278 Gene3D Transferase(Phosphotransferase) domain 1 139 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00477 Cca-Chr3 7669642 7674488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00477 25 272 MAP Kinase Kinase Kinase AT1G62400 63.492 1.39e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca03g00477 PK_Tyr_Ser-Thr 3.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00477 - - gmx:100807757 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00477 03 7669642 7674488 Cca03g00477 03 7669642 7674488 ECH
Cca11g01849 11 43583916 43587184 Cca03g00477 03 7669642 7674488 PCT