Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00469 ATGGGTTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCCTCTTCACCATCAGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCTCCACATGACCAAGCCCTAAAGTGCCCCAGGTGTGACTCAACCCACACAAAGTTCTGCTACTACAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTGAGGAACATCCCTGTTGGTGGAGGCTGCAGAAAGAACAAAAAAGTCTCCGCCAAAAAGTCCAACGACCACCAATTAGTTAACAACCAAATGAGCCAAACACAGCCTCCACCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTCCCTGACNNNNNNNNNNNNACAACCCCAAATACCTTCAACTCCCTTTCCCTGACGTGCAATTTTCCCACCTCAGCAACTTTCTTGGAACCAATGCTGCAGGAGCACTGGGAGGAAACCCTAGTTTCATGGAGGGCAAGTATGGTATTGGCATGA 594 0.4781 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHQLVNNQMSQTQPPPSYHHNPKDLQLSFPDXXXXTTPNTFNSLSLTCNFPTSATFLEPMLQEHWEETLVSWRASMVLA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00469 197 MobiDBLite consensus disorder prediction 115 150 - -
Cca03g00469 197 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Cca03g00469 197 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Cca03g00469 197 MobiDBLite consensus disorder prediction 118 137 - -
Cca03g00469 197 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Cca03g00469 197 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 171 - -
Cca03g00469 197 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 171 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00469 Cca-Chr3 7393772 7394915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00469 1 107 C2C2-Dof Transcription Factor Family AT5G62940 65.354 2.04e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g00469 zf-Dof 7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00469 - - gmx:778107 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01840 11 43425101 43426903 Cca03g00469 03 7393772 7394915 PCT