Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00465 ATGACCTCAAAGCAAGAATTACTTGCTACAGACAAGATTGGACCAGTGGATTCCAAGCAGGAATCAGATGGAAGTCTCACTGCTGTGCAGACTCTTGCATCAACAGCACTCTGCGGTATCATCCACTCAATCATTGGAGGGCAGCCTCTCCTCATACTCGGCGTGGCCGAGCCGACAGTTCTGATGTATACATTCATGTATAACTTTGCTAAAGATCGCAAGGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTGTGTGTTTGGACTGCCTTGTTGCTCTTCTTGCTGGCTATTCTTGGTGCCTGCTCCATTATCAATAGATTCACACGCCTTGCTGGTGAATTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGACTTGTAGAAGAGTTTGGTGCTCCCAAGAACCAGAGAGAAGGCACCAATCAGATTGCACTCCAATCATCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGTCTTCTTTTTACTGGTCTACAAAGCCGCAAAGCTAGATCCTGGCGTTACGGGACAGGTTGGCTACGGGGATTTATAACTGATTATGGAGTCCCATTAATGGTTCTCATATGGACTGGTGTGTCTTACATACCAGTCAATGAGGTTCCAAGGGGAATCCCTAGGAGACTTTTTAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGAATGTGCCCCCTTTGTATATTGTTGGAGCATTTATTCCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCATAGTGTTGCATCACAACTTGCTCAGCAGAAGGAGTTCAATCTAAGAAAACCCCCATCTTATCATTATGACTTGCTGCTCTTGGGCTTCTTGACCATATTGTGTGGGCTTATTGGAATCCCTCCTTCCAATGGTGTGATCCCACAATCTCCGATGCATACAAAGAGCTTAGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGCGGAGAAATGTTAACTTGAGCCAGTTATACCAAAATATGAAAGAAGCATATGATGAAATGCAGACTCCATTGGTTCCCCAAATGCCACCAACCTTGGGGCTGAAAGAACTGAAGGAATCTACCATTGAACTGGCTTCCAGTCAAGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTTGATGACCTTTTGCCAGTTGAAGTTAAAGAGCAGCGTCTCAGCAATCTGCTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCCCTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTACTTTGCCTTCATGGCAATTGAAAGCTTGCCAGGAAATCAGTTTTGGGAGAGAATATTGTATCTGTTCACTGCTCCTAGTCGAAGATACAAACTGCTGGAGGAATACCATGCCACCTTTGTTGAGACCGTGCCCTTCAAAACAGTTGCCATGTTTACCGTGTTCCAGACAGTATACTTGCTTCTCTGCTTTGGCATAACATGGATACCAATTGCCGGGGTTCTTTTCCCATTGTTAATCATGCTTCTTGTTCCAGTACGGCAATATTTTCTTCCAAGGTTCTTTAAAGGTGCGCATCTTCAAGAGTTGGACGCAGCAGCATATGAGGAAGCACCTGCCATTGCTTTCAACATGTCCTTTGAAGGTCCAAGTAACCAGGCACCAACAATCAATGTGAGTGGTGGGGAGATTCTAGATGAAATCATCACAAGGAGTCGTGGAGAGATTCGGCGCACTCAAAGCCCCAAAACAACAAGTTCAACTCCAACTTCAACAGGAGACATAAGACCAGCTAATAGCCCTCATCTAGCAAGAAGGATTCCCAGCCCTCGAGTTACTGAATTGAGAGGGGAAAGCAGCCTCGGACCAACTGGGAAGGAGATCAAGCTAACGCAAACGCCTAGTCCAAGGTCACCAGCTCTTGGAAAACTTACCAAAGATTCACCTTCATCCTAA 2049 0.4475 MTSKQELLATDKIGPVDSKQESDGSLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVLMYTFMYNFAKDRKDLGHKLFLPWTGWVCVWTALLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVEEFGAPKNQREGTNQIALQSSWLFGNGMFALVLSFGLLFTGLQSRKARSWRYGTGWLRGFITDYGVPLMVLIWTGVSYIPVNEVPRGIPRRLFSPNPWSPGAYSNWTVVKEMLNVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPPSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRRNVNLSQLYQNMKEAYDEMQTPLVPQMPPTLGLKELKESTIELASSQGYIDAPVDEVVFDVNKDVDDLLPVEVKEQRLSNLLQALMVAACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKLLEEYHATFVETVPFKTVAMFTVFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYFLPRFFKGAHLQELDAAAYEEAPAIAFNMSFEGPSNQAPTINVSGGEILDEIITRSRGEIRRTQSPKTTSSTPTSTGDIRPANSPHLARRIPSPRVTELRGESSLGPTGKEIKLTQTPSPRSPALGKLTKDSPSS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00465 682 Pfam HCO3- transporter family 20 141 IPR011531 GO:0006820|GO:0016021
Cca03g00465 682 Pfam HCO3- transporter family 422 512 IPR011531 GO:0006820|GO:0016021
Cca03g00465 682 Pfam HCO3- transporter family 164 335 IPR011531 GO:0006820|GO:0016021
Cca03g00465 682 MobiDBLite consensus disorder prediction 602 682 - -
Cca03g00465 682 MobiDBLite consensus disorder prediction 610 628 - -
Cca03g00465 682 MobiDBLite consensus disorder prediction 656 682 - -
Cca03g00465 682 PANTHER BORON TRANSPORTER 2-RELATED 20 667 - -
Cca03g00465 682 PANTHER ANION EXCHANGE PROTEIN 20 667 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00465 Cca-Chr3 7298750 7305542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00465 19 657 Antiporters AT3G62270 74.022 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00465 K24194 - gmx:100793554 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00465 03 7298750 7305542 Cca03g00465 03 7298750 7305542 ECH
Cca11g01834 11 43358851 43364716 Cca03g00465 03 7298750 7305542 PCT