Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00464 ATGGATCTTGAGACAATGCTCAAATATGCCTCACAACCAATGCATTTACAAGAAAGTTGCTTGCAACCTAGTATGAAAGATATGCTTGCTTTTGGGAATCCTTCATCATCACAAGGATTCTTGCAAGATTTTCACCAAATTGATCAATTTCATGTGAATGAATCCTCATCCAATCCAATCCAAACTCCAAATTTTGATGCTTTGGACAATTTCACCTTTAAGAGTAGTTCATCATTTGATGTTTATGAGTGCAAGCCTTTTGTGGAGAATAGTGGCAACGCTCATGTTATGGACAATTTCCTATATGGAAATTATAGTTTGAACCACCCTCCAAGGAATCAACTAGATATAACAGTTGCAAATCAAAGTTTTTTGCCTTTTAATCCTCAAGAAACCAAGTTCTCAAATTATGTTGCACCGGATGAAGTTTCGAGCATATCCCCAATGAATTATTACAAAAGAGTTGGCGTGAACAAAAATAATAAATCCTATCCAACCAGAAGAACATACAAAATTCGCAAGAAGTCCAACATAGTAAAGGGGCAATGGACAATAGAAGAAGATGGGTTGTTGATTCAACTGGTAGAACAATATGGACTAAGGAAGTGGTCTCATATTGCTAAGGTTTTGCCTGGAAGAATAGGAAAACAATGTAGAGAGAGATGGCATAACCATCTGAGGCCTGACATCAAGAAGGACACATGGAGTGATGAAGAGGACAAAATACTAATCCAAGCTCATGCAGAGGTAGGAAACAAATGGGCAGAGATTGCCAAAAGGTTGCCAGGAAGAACTGAGAACTCAATCAAGAACCATTGGAATGCAACCAAGAGAAGGCAATACTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGCACTCTTCTGCAAGACTATATCAAGAGCTTGAACTTGGACAAGAACCCTCCAATAGACTATAGGAGAAAATCTTCTGTCAATTATGCCAAAGCCATGAAAAGCAAAACCACCACAAGCAAAGCCACTGCACCACCTTTGCCCCAGGCAGCATATCAGTTTTGTGCCACTGATAATAGCATGCCACCAAACTATGATTTTAATAATGTGGTCCCTGATTGTTTCTTTGGGGAGAATTTTTTTGAAGAGGGATATAGTATTGATTCTCTTCTAGATGATGTGCCCCGTGCTCTTCCTATGGATAAGAAAATGCAATGTGATCCTATAATATTGGAGGCAAAACATTATGATCATGTTGTTAATATCGATGAGAATAATAATCATGTTGAGTCAGAGGTGCCACTAGAGATGTTGGAGGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATGTTTCAGATTAATAATGAAGTTGTTCATGTGTGA 1365 0.3846 MDLETMLKYASQPMHLQESCLQPSMKDMLAFGNPSSSQGFLQDFHQIDQFHVNESSSNPIQTPNFDALDNFTFKSSSSFDVYECKPFVENSGNAHVMDNFLYGNYSLNHPPRNQLDITVANQSFLPFNPQETKFSNYVAPDEVSSISPMNYYKRVGVNKNNKSYPTRRTYKIRKKSNIVKGQWTIEEDGLLIQLVEQYGLRKWSHIAKVLPGRIGKQCRERWHNHLRPDIKKDTWSDEEDKILIQAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQDYIKSLNLDKNPPIDYRRKSSVNYAKAMKSKTTTSKATAPPLPQAAYQFCATDNSMPPNYDFNNVVPDCFFGENFFEEGYSIDSLLDDVPRALPMDKKMQCDPIILEAKHYDHVVNIDENNNHVESEVPLEMLEVEVKKELDLVEMMFQINNEVVHV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00464 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
Cca03g00464 454 PANTHER MYB PROTEIN-RELATED 113 306 - -
Cca03g00464 454 CDD SANT 234 277 IPR001005 -
Cca03g00464 454 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Cca03g00464 454 Pfam Myb-like DNA-binding domain 183 240 - -
Cca03g00464 454 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Cca03g00464 454 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
Cca03g00464 454 CDD SANT 183 226 IPR001005 -
Cca03g00464 454 Gene3D - 179 231 - -
Cca03g00464 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Cca03g00464 454 SMART sant 179 228 IPR001005 -
Cca03g00464 454 SMART sant 231 279 IPR001005 -
Cca03g00464 454 PANTHER BNAC07G50190D PROTEIN 113 306 - -
Cca03g00464 454 Gene3D - 233 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00464 Cca-Chr3 7287804 7289577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00464 80 388 MYB Transcription Factor Family AT4G18770 49.118 1.28e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g00464 Myb_DNA-bind_6 2.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00464 K09422 - gmx:102662267 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00464 03 7287804 7289577 Cca11g01832 11 43338429 43341575 ECH
Cca03g00464 03 7287804 7289577 Cca03g00464 03 7287804 7289577 ECH
Cca11g01832 11 43338429 43341575 Cca03g00464 03 7287804 7289577 PCT