Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00453 ATGGAGAACAACCCCTACGACGACTTTTACTGTTCAGCCTCTTACTCAGACCAGTCAACAATGGCTCCACCTCCGCCGTTTGAGAAGGAGGAGGATGTTTCAAAACCACTATGTGCTAAAGTTGCTTCTCACCCTCTCTTTCCTCACCTCCTCCATGCATACATCGATTGCCAAAAGGTGGGAGCGCCACAAGATGTGGCACACCTATTAGAAGGAATCAAAGGAGATCATGTGATATCTGATGGCTTCTTGGATGATGATCCCGAGCTCGATCATTTCATGGGAGCGTTTTGCGATTTGTTGGTGAAGTTCAAATCGGATCTTGCAAGGGTTTTTGACGAGGCAACCATGTTCCTCAGCCACATGGAAACGCAGCTTCACTCCATCTGCAACGACCCTGCTGCCACAAACAACACTCCTCAACCTGATGAAGTTACTGGATCATCTGGAAAAGATTTGAGTAGGGAGGAGAAAGAGGCAAATGAGTGCAAGAGGGTAAATGAAGTTCAAGAGATGAAGAGTAACCTTCTACGTAGATATAGCGGTTACATTACTAATCTGAAGCATGAATTTTCCAAAAAGAAGAAAAAAGAAAAGCTACCAAAAGAAGCAAAACAAATCTTACTTGCATGGTGGAATCTTCATTTTAAATGGCCGTACCCAACTGACGCGGATAAGGTTGCCTTAGCTGAATGGACTGGTTTAGAGCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGAAAGCGCCATTGGAAACCAACAGAGGGAATTCACGCTGCAATTTTTGATGGTCTATATGGACCCCTGCACGAGTGA 819 0.4408 MENNPYDDFYCSASYSDQSTMAPPPPFEKEEDVSKPLCAKVASHPLFPHLLHAYIDCQKVGAPQDVAHLLEGIKGDHVISDGFLDDDPELDHFMGAFCDLLVKFKSDLARVFDEATMFLSHMETQLHSICNDPAATNNTPQPDEVTGSSGKDLSREEKEANECKRVNEVQEMKSNLLRRYSGYITNLKHEFSKKKKKEKLPKEAKQILLAWWNLHFKWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRHWKPTEGIHAAIFDGLYGPLHE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00453 272 SMART KNOX2_2 80 131 IPR005541 GO:0003677|GO:0005634
Cca03g00453 272 SUPERFAMILY Homeodomain-like 192 256 IPR009057 -
Cca03g00453 272 Gene3D - 188 260 - -
Cca03g00453 272 Pfam Homeobox KN domain 211 250 IPR008422 GO:0003677|GO:0006355
Cca03g00453 272 CDD homeodomain 206 254 IPR001356 GO:0003677
Cca03g00453 272 SMART ELK_2 171 192 IPR005539 GO:0003677
Cca03g00453 272 Pfam KNOX2 domain 86 130 IPR005541 GO:0003677|GO:0005634
Cca03g00453 272 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Cca03g00453 272 ProSiteProfiles ELK domain profile. 171 191 IPR005539 GO:0003677
Cca03g00453 272 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 271 - -
Cca03g00453 272 SMART HOX_1 193 258 IPR001356 GO:0003677
Cca03g00453 272 MobiDBLite consensus disorder prediction 131 160 - -
Cca03g00453 272 Pfam KNOX1 domain 39 73 IPR005540 GO:0003677|GO:0005634
Cca03g00453 272 MobiDBLite consensus disorder prediction 131 148 - -
Cca03g00453 272 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Cca03g00453 272 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 29 271 - -
Cca03g00453 272 Pfam ELK domain 171 192 IPR005539 GO:0003677
Cca03g00453 272 ProSiteProfiles 'Homeobox' domain profile. 191 254 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00453 Cca-Chr3 7127653 7136036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00453 12 268 Homeobox Transcription Factor Family AT1G23380 48.872 4.24e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca03g00453 KNOX2 4.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00453 - - ccaj:109811765 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00453 03 7127653 7136036 Cca03g00453 03 7127653 7136036 ECH