Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00442 ATGGGTATCAATGTAAAGGGGCAAATAGAGAGGGTGAATGGGAAGGAACTGAGTTACACTGAATTTGTGGAGAGATATATGGAGAAGAACCAGCCCGTGGTTCTCACTGGGCTAATGGACCCTCATCATTGGAGAGCTTCCACTGACTGGGTCACACTTCAGGGCCAACCCAACTTCCATTTTTTCTCCACTCATTTTGGGCCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGTTGGTTTCAGATTTTATAGGACGTTGCCTTCAACTTGAGGCTTCTGCTGCTCAATGTAATGATGAAAATGGAGCAAGTGGTGGTTCCTCTGAATCTGTACCGTATTTAAAGGATTGGCATTTTGTAAAGGAATATCCTGAATATGTAGCGTATATCACTCCAATGTTCTTTTGTGATGACTGGCTCAACCTGTATCTTGATAACTTCAGAATTCATATTGATTCTGACACAAACCATCAAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCAAACTCAAAATTTCCTTGTTTTAACAAGGCTATCTGGTTAGAATGCACACAAGATGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACTATATCTATAAACCACAATTGGTTCAATGGCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCGCCTTGGCCAACTTGGTTATACTGCGTTATATAAATAGAAGATACGGAAGTACCACCGGAAGTTCATCAACAATTGCTCAGCATTTATCCATGAATCTTGGGTGCTTAAGGAAGATTGCATCAGAGATGAAACACATGCATGCTCTAGAAGGAAATCAAGATTGTGTTGTGGATGTGATCAAAGCATTTTTAGATCCCAGGTTTTCCAAATTATGCATGCATGTAGGAAGAACATATACTATGATACATGAGCAATCTCACTTGTCCTCTGATTTTGAGAGCACTTCAATGAGTGATTTGGTGGACCTCAATGATATGAAAGCATACACATCTCAGATCAACACACCTGAAGATCTCATTAAATTTATAGACAATGGTGTTGCAGAACTGAGTGACTGTTCCATTGAGCCATCTGTACCCAATGTTGCTTGA 1470 0.3932 MGINVKGQIERVNGKELSYTEFVERYMEKNQPVVLTGLMDPHHWRASTDWVTLQGQPNFHFFSTHFGPSKVQVADCDTREFTDQKREEMLVSDFIGRCLQLEASAAQCNDENGASGGSSESVPYLKDWHFVKEYPEYVAYITPMFFCDDWLNLYLDNFRIHIDSDTNHQNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNMKNCVYNIFDEVSNSKFPCFNKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFALANLVILRYINRRYGSTTGSSSTIAQHLSMNLGCLRKIASEMKHMHALEGNQDCVVDVIKAFLDPRFSKLCMHVGRTYTMIHEQSHLSSDFESTSMSDLVDLNDMKAYTSQINTPEDLIKFIDNGVAELSDCSIEPSVPNVA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00442 489 ProSiteProfiles JmjC domain profile. 148 303 IPR003347 -
Cca03g00442 489 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 476 - -
Cca03g00442 489 Pfam Cupin-like domain 21 286 IPR041667 -
Cca03g00442 489 Gene3D Cupin 2 287 - -
Cca03g00442 489 SUPERFAMILY Clavaminate synthase-like 7 315 - -
Cca03g00442 489 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 476 - -
Cca03g00442 489 SMART cupin_9 145 303 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00442 Cca-Chr3 6939002 6942613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00442 7 295 Glycosyltransferase AT1G78280 25.418 2.66e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca03g00442 Cupin_8 4.3e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00442 - - gsj:114409851 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00442 03 6939002 6942613 Cca03g00442 03 6939002 6942613 ECH