Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00439 ATGATGGTTCAAGGAGCTTGGCAAACCCGGCATAATGGACTAGAAGGGCAGCGGCTTGTAATCCCTCCACTGTCAGGAGCCGGAAGTGTTCGCTGCTCTGTTAAGCCAGCCTCACGCTATGCCCTCCGGTTTAGGAGCAACGAAACCTGCGCCTTCGTCCAAGTTCCGCACAAACCTTTCTCAGTGGTCTCTCACTGGGGTTCATATAACATAGCTGTAATGCCTGTGAATCCATGGACCCCCTTCTGCTTGTTCTTGTGCTTATCTCTTTTATTATACAATTCTTTTGTAGTTATAGCAGTGAACCAACAAGGCCAAGCTCTCCTTTCATGGAAGAGAACCTTAAACAGCTCCGAGGCTTTGAACAACTGGGAACCAATTCACGAAACACCATGCCAGTGGTTTGGAGTGAGTTGCAACAAGAGAAACGAAGTTGTGGAGTTAGATCTGAGGAATGTGGTTTTGCTTGGAGGACTTCCTTCTAACTTCAACTCACTCCCTTCATTGAATGTTCTCATATTAACTGGCACAAACCTCACTGGTTCAATTCCAAAGGAGATAGCTACCCTCACAGAACTCACCTACTTGGACTTAAGCCACAATGCGTTGAATGGTGAAATCCCAAATGAACTCTGCCACTTGAATAAGTTAAAGCAATTGCACCTGAACTCAAACAACCTGGTACGGTCCATTCCAGTTTCAATTGGTAATCTCAGTATGTTAGAGTGGTTAATCTTGTATGATAATTTGTTAAGTGGTGAAATTCCCAGCACCATAGGGAATCTGAGGAACCTAAAAGTGATAAGAGCTGGTGGGAACAAGAACCTACGTGGCCCTTTACCACAAGAAATTGGTAACTGTACTAATTTAATGATACTAGGCCTCGCTGAAACAACCATTTCAGGGTTTCTACCTTCAACATTGGGTGTGTTAAAGAAGCTACACACCATTGCACTCTACAGTACTTCCCTTTTATCTGGTCCAATTCCACATGAACTCGGAAACTGCACCGAACTACGAAACATTTACCTCTATGAAAACTATCTAACAGGTCCCATACCGGGCACGTTGGGTAACCTTGGCAAGCTGAAAACTTTGCTCCTGTGGCGGAACAACCTCGTTGGGAACATTCCAGCGGAGATAGGAAAGTGTAACGAACTAACGGTCGTTGACGTTTCGATGAACTCGCTAACGGGGAGCATTCCAAGGAGTGTGGGAAACTTGACGGCGTTAGAGGAACTGCAGCTCGGCGTTAACGGGATTTCGGGGGTGATTCCGCCGGAGATAGGAAAATGTGGTGAACTCACTCACGTGGTGCTTGACAACAATGAAATAACGGGAACGGTGCCGTCCGAATTGGGGAACCTGAAGAACCTAACGCTGTTATTCCTCTGGCACAACAAGCTCAACGGTTCTATACCGTCGACGCTTTCGAAATGCGAAAGCCTTGAAGCTTTGGATCTCTCGGTGAATAATTTCACGGGTTCTATACCCGAGGGAATATTCCGCCTCGGCAAACTGAACAAGCTTTTGCTTCTTTCAAACGCTCTTTCAGGAGAATTACCCTCCGAGATTGGTAATTGTTCTTCTCTGATTCGATTTAGAGCAAGTAATAATTTCATTACCGGGAATATTCCCTCACACATTGGGAATCTCGCGAATTTGACTTTCTTGGACCTCGGAAACAACCGCATCGCCGGAACTATCCCGGACGAGATCTCCAGCTGCCGGAATCTCACGTTTCTAGACTTGCGTTCGAATTTCATAACCGGAAACCTTCCGGCGAGTCTCGGTAAGCTTAATTCGCTTCAGTTTATTGATATCTCCGATAATAATCTACACGGCACGCTTAGTCCCAGCCTAGGGTTTCTTAATTCTCTGAATAAATTGGTTTTGAGGAAGAATAGTATTTCCGGTTCAATACCGAGTCAACTCGGTTTCTGCGCGAAGCTGCAGTTGCTGGACCTCAGCAGCAACCGAATCTCCGGGAATATTCCGGGGAGTCTAGGGAATATTCCGGCGATGGAGATAGCTCTGAATCTGAGCTTGAACCAACTTTCCGGTGAAATTCCAAGGGAGTTTTCGTCGTTATCGAAACTCGCCGTTTTGGATATTTCTCATAATCGTCTCAGTGGCGACCTTCGGCATCTCGCGGAATTGCAAAATCTCGTCGCGCTGAATGTCTCGTACAACGAATTCTCGGGGCGCGTTCCTGACACGCCTTTCTTCGCGAGGCTTCCGGTGAGCGCGCTCGAGGGGAACCCGGCGTTGCGCCTGTCTGGCGGCGACGGAGGATCGCGGCGGAGAGGTAAGGCGGCGCGCGCGGCATTCGCGGTTCTGCTATGCGTCGCCGCGTGCGCGTTACTCGTGGCGGCGCTGTGTGTCGTTGGCGCAGCGAAACGACGCGAGGAGAATGAAAACGGCGTTAGTGATAGGAGTGACGCTGACGTGGACATGGCCCCGCCTTGGAAGGTGACGCTTTACCTGAAACTGGATCTGTCGATTGATGACGTGGCGAAATGCTTGACAGCTGGCAATGTCGTTGGGCGGGGACGAACCGGCGTCGTTTATAGAGTGGAAACACCGACGGGGTTGACCGTGGCGGTGAAGAGGTTTAGGTTAAGGGAGAAATTCTCGGCGGCGGCGTTCGCGGCGGAGATTGCGACGCTGGCGCGGATCCGACACCGGAATATTGTGCGGCTGTTGGGTTGGGCGGAGAACCGGAGAACGAAGCTGCTATTCTATGATTACCTTGTTGGTGGGAACTTACACGCCCTGCTGCACGAGGGGTGCGCAGGATTAGTGGAGTGGGAGACACGGCTCAAGATAGCAGTGGGCGTGGCCGAGGGTCTGGCCTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGGGACGTGAAGGCGCACAATATTTTACTTGGAGATAGATATGAACCGTGTTTGGCTGATTTCGGATTCGCTCGGTTGGTAGAAGACGAAGAACACTGTTCTTTTTCCATGAACCCCCAATTCGCGGGTTCTTACGGCTACATTGCTCCGGAGTATGCCTGCATGCTTAAAATCACAGAGAAGAGTGATGTGTATAGTTATGGGGTGGTCCTACTAGAGATGGTGACGGGGAAGAGGGCGGTGGATGCATCATTTCCGGAGGGACAGCAACATGTTGTGGAATGGGTCCGAGAGAAGCTGAAGAGGAAGAAGGACCCGGTTGAGGTTATGGACCCCAGGCTTCAGGGGCTTCCAGACACGCAGATACAAGAGATGCTGCAAGCTCTTGGTATCTGTCTCTTGTGCACGAATACTCGCGCGGAGGATCGTCCCACAATGAACCACGTGGCTGCATTATTGAGGGGAATTCGACATGACCCTCCAGCAGGGTCTCAGCCCCACAAAACCACCCATGCTTCCTCTTTTTCGTCCTCTTCGGTGACCCCGGCAGCTCACTTGTTGCTTCTACAATCATCTTCTCGGTCCTCATCATTCGCTTATTCATCTTCTTCAGCTGTAGCCTACCCCCAACACGGAATCAGCCATGAGTTTTGA 3546 0.5 MMVQGAWQTRHNGLEGQRLVIPPLSGAGSVRCSVKPASRYALRFRSNETCAFVQVPHKPFSVVSHWGSYNIAVMPVNPWTPFCLFLCLSLLLYNSFVVIAVNQQGQALLSWKRTLNSSEALNNWEPIHETPCQWFGVSCNKRNEVVELDLRNVVLLGGLPSNFNSLPSLNVLILTGTNLTGSIPKEIATLTELTYLDLSHNALNGEIPNELCHLNKLKQLHLNSNNLVRSIPVSIGNLSMLEWLILYDNLLSGEIPSTIGNLRNLKVIRAGGNKNLRGPLPQEIGNCTNLMILGLAETTISGFLPSTLGVLKKLHTIALYSTSLLSGPIPHELGNCTELRNIYLYENYLTGPIPGTLGNLGKLKTLLLWRNNLVGNIPAEIGKCNELTVVDVSMNSLTGSIPRSVGNLTALEELQLGVNGISGVIPPEIGKCGELTHVVLDNNEITGTVPSELGNLKNLTLLFLWHNKLNGSIPSTLSKCESLEALDLSVNNFTGSIPEGIFRLGKLNKLLLLSNALSGELPSEIGNCSSLIRFRASNNFITGNIPSHIGNLANLTFLDLGNNRIAGTIPDEISSCRNLTFLDLRSNFITGNLPASLGKLNSLQFIDISDNNLHGTLSPSLGFLNSLNKLVLRKNSISGSIPSQLGFCAKLQLLDLSSNRISGNIPGSLGNIPAMEIALNLSLNQLSGEIPREFSSLSKLAVLDISHNRLSGDLRHLAELQNLVALNVSYNEFSGRVPDTPFFARLPVSALEGNPALRLSGGDGGSRRRGKAARAAFAVLLCVAACALLVAALCVVGAAKRREENENGVSDRSDADVDMAPPWKVTLYLKLDLSIDDVAKCLTAGNVVGRGRTGVVYRVETPTGLTVAVKRFRLREKFSAAAFAAEIATLARIRHRNIVRLLGWAENRRTKLLFYDYLVGGNLHALLHEGCAGLVEWETRLKIAVGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGFARLVEDEEHCSFSMNPQFAGSYGYIAPEYACMLKITEKSDVYSYGVVLLEMVTGKRAVDASFPEGQQHVVEWVREKLKRKKDPVEVMDPRLQGLPDTQIQEMLQALGICLLCTNTRAEDRPTMNHVAALLRGIRHDPPAGSQPHKTTHASSFSSSSVTPAAHLLLLQSSSRSSSFAYSSSSAVAYPQHGISHEF 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00439 1181 ProSitePatterns Protein kinases ATP-binding region signature. 848 870 IPR017441 GO:0005524
Cca03g00439 1181 MobiDBLite consensus disorder prediction 1121 1140 - -
Cca03g00439 1181 PANTHER OS01G0170300 PROTEIN 76 1137 - -
Cca03g00439 1181 Pfam Leucine rich repeat 147 203 IPR001611 GO:0005515
Cca03g00439 1181 Pfam Leucine rich repeat 434 493 IPR001611 GO:0005515
Cca03g00439 1181 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Cca03g00439 1181 Pfam Protein kinase domain 845 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00439 1181 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 76 1137 - -
Cca03g00439 1181 SUPERFAMILY Protein kinase-like (PK-like) 833 1118 IPR011009 -
Cca03g00439 1181 Pfam Leucine rich repeat N-terminal domain 102 140 IPR013210 -
Cca03g00439 1181 Gene3D Ribonuclease Inhibitor 99 273 IPR032675 -
Cca03g00439 1181 SMART LRR_sd22_2 552 575 - -
Cca03g00439 1181 SMART LRR_sd22_2 456 485 - -
Cca03g00439 1181 SMART LRR_sd22_2 697 722 - -
Cca03g00439 1181 SMART LRR_sd22_2 190 216 - -
Cca03g00439 1181 SMART LRR_sd22_2 648 667 - -
Cca03g00439 1181 SUPERFAMILY RNI-like 449 736 - -
Cca03g00439 1181 ProSiteProfiles Leucine-rich repeat profile. 554 576 IPR001611 GO:0005515
Cca03g00439 1181 ProSiteProfiles Protein kinase domain profile. 842 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00439 1181 Gene3D Ribonuclease Inhibitor 274 499 IPR032675 -
Cca03g00439 1181 SMART serkin_6 842 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00439 1181 SMART LRR_typ_2 456 480 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 720 753 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 552 576 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 624 648 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 360 384 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 481 504 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 214 238 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 408 432 IPR003591 -
Cca03g00439 1181 SMART LRR_typ_2 190 213 IPR003591 -
Cca03g00439 1181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Cca03g00439 1181 SUPERFAMILY RNI-like 147 470 - -
Cca03g00439 1181 ProSiteProfiles Leucine-rich repeat profile. 699 721 IPR001611 GO:0005515
Cca03g00439 1181 AntiFam Antisense to SRP RNA 5 59 - -
Cca03g00439 1181 Gene3D Transferase(Phosphotransferase) domain 1 919 1140 - -
Cca03g00439 1181 Gene3D Phosphorylase Kinase; domain 1 824 917 - -
Cca03g00439 1181 Gene3D Ribonuclease Inhibitor 678 761 IPR032675 -
Cca03g00439 1181 Gene3D Ribonuclease Inhibitor 592 677 IPR032675 -
Cca03g00439 1181 Gene3D Ribonuclease Inhibitor 500 591 IPR032675 -
Cca03g00439 1181 PRINTS Leucine-rich repeat signature 697 710 - -
Cca03g00439 1181 PRINTS Leucine-rich repeat signature 193 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00439 Cca-Chr3 6915838 6921970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00439 99 1169 Receptor kinase-like Gene Family AT5G56040 51.797 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g00439 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00439 - - gmx:100778064 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00439 03 6915838 6921970 Cca03g00439 03 6915838 6921970 ECH