Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00430 ATGGCATCATCCAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCCTGAGGAGGAAATGCCTTCCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACCAAGCTCCTCAACGAACTCCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTAGCTTATGAAGCTGAGGCACGTGTGAGAGACCCCGTTTATGGCTGCGTTGGTGCCATCTCTTTCCTCCAGAGACAAGTCCAGAGGCTCCAAAAGGAGCTTGATTCTGCAAATGCTGATCTCCTTCGCTATGCCTGCAATGACATGCCTCCACCTTCTCTTCCTATGCCACCACCATCAATCACAACAACAAATACAATTCCACAAATAATGCCTCAAAGGTCTTATAGTGCAAGTGTTATTTATGAACATTCTCACTCATTGAGCAAGCCAAATGGTTCCCTCTCTCTCTCTCCCTCCCTTGGATCACTTTTGTCAGTCACTTTTCTCCCTCTCGCAGCACACAGCACGGGCACTGTTACACTCATAAGAATCCAGATAAATCACAACATCCCTTCAAAGAAAAGAGGGAGGGGAGGGCCTGACATAGACCCTCTTCCTCTTCTTAGCTATCTAGAAGTGAGAGTCACGTCCTCTTCTTAA 690 0.4797 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDMPPPSLPMPPPSITTTNTIPQIMPQRSYSASVIYEHSHSLSKPNGSLSLSPSLGSLLSVTFLPLAAHSTGTVTLIRIQINHNIPSKKRGRGGPDIDPLPLLSYLEVRVTSSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00430 229 Coils Coil 89 116 - -
Cca03g00430 229 PANTHER ELONGATED PETIOLULE 1 1 152 - -
Cca03g00430 229 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cca03g00430 229 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cca03g00430 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00430 Cca-Chr3 6746656 6751947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00430 1 114 AS2 family AT5G63090 92.174 1.43e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g00430 LOB 8.5e-42 No_clan