Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00426 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTTTTCAATTACATTACCAGATTTGGTGTTGGCTGCTGGAGTTCCGTTCCCAAACAAGCTGGTCTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAGCAGGAGGAGGATCTTATAATTAGTCTCCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAATTACCGGGGAGGACAGATAATGAGATTAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAGCCACTCCTCAATGTTGAAGATCGCATGATAAAGGAAGAGAAGGAAACCACAGCCACAGAGACAGCACCTATGCTACTACCGGTCTCTCAAGGGGTTTTAGAGTCACCACTTCTAGTGAACAATTCTAATAGTTACTATGATGATGGAGTAGCACTAGCGGTAACAGAAGCTTCAAGGGAAGTTTACGTGAACAAGCCTTCTGCATTGGACCCTTTGTCCTACTTTGAATTCCAAATGGGTAATTATAGTTATAACTCAAGTGTGAGTCATTGCCACCCAATGAGACAATTTGATCAGAACCAGGTGGGAACCGATTCTAGCTACGGATTCTCGTCAATGCCGTGTCTGAATGGTTCTGATCATGGGAACGTGTCGGTGACGGACTCTGTCGGAGATCCAACATCGACCAGTGGTATAACCAGAAATAACTCAAGCATGAGTGTTTATCCGGGGTGTCAAATGATGGGGTTCTCGTGGGATGGTGAGAGTAATAAGGTTGATCCTTTGTTACAATTTGAAGTCAATGTCGTAAAATCTGAAGAGTTCAAGGCAAGTTCGTGGCAAGAAGAAGCGCAGATTCTGGCTCAGAATTCAATAGATTTCACTAGCTATCCGTTAATGACGTCACTGTCGGAGGATCTAACGGTGGGAGCAAATTTTGATGTTTTCCAGCACATGTGA 1062 0.435 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLNVEDRMIKEEKETTATETAPMLLPVSQGVLESPLLVNNSNSYYDDGVALAVTEASREVYVNKPSALDPLSYFEFQMGNYSYNSSVSHCHPMRQFDQNQVGTDSSYGFSSMPCLNGSDHGNVSVTDSVGDPTSTSGITRNNSSMSVYPGCQMMGFSWDGESNKVDPLLQFEVNVVKSEEFKASSWQEEAQILAQNSIDFTSYPLMTSLSEDLTVGANFDVFQHM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00426 353 PANTHER MYB TRANSCRIPTION FACTOR 1 347 - -
Cca03g00426 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca03g00426 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca03g00426 353 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca03g00426 353 CDD SANT 70 109 IPR001005 -
Cca03g00426 353 Gene3D - 11 67 - -
Cca03g00426 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g00426 353 CDD SANT 17 61 IPR001005 -
Cca03g00426 353 Gene3D - 69 145 - -
Cca03g00426 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g00426 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca03g00426 353 PANTHER MYB DOMAIN PROTEIN 55 1 347 - -
Cca03g00426 353 SMART sant 13 63 IPR001005 -
Cca03g00426 353 SMART sant 66 114 IPR001005 -
Cca03g00426 353 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00426 Cca-Chr3 6628178 6630187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00426 1 133 MYB Transcription Factor Family AT4G01680 84.211 6.11e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g00426 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00426 K09422 - gmx:100799243 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00426 03 6628178 6630187 Cca03g00426 03 6628178 6630187 ECH
Cca11g01805 11 42896030 42897874 Cca03g00426 03 6628178 6630187 PCT