Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00420 ATGAAGACCATTCTCTCCTCTGAAATCATGAACATCCTCGACGGCGTGAGCATCAAGGTTCACGCCAAGGTCATCGAGGTCGAGGGTCCCCGCGGAAGTCTCGTTCGAGACTTCAAGCATTTGAACCTCGATTTCGATCTCATCACCGATGACAACGGAAAGAGGAAGCTCAAGATTGACGCCTGGTTCGGCTCCCGGAAAATCTCCGCTGTCATCCGCACCGCCCTTAGCCACGTCGAGAATCTCATCACCGGGGTCACCAAGGGTTACCGCTACAAGATGAGGTTCGTCTACGCTCACTTTCCCATCAACGCTAGCATCACCAACAACAACAAGTCCATCGAGATCCAAAACTCCCTCGGCGAGAAAAAGGTTAGGAAAGTGGACATGCTTGAGGGTGTGTCCATCCTTCGATCTGAGAAGGTGAAGGATGAAGTCGTTTTGGATGGAAACGACATTGAACTTGTTTCAAGATCTTGTGCTCTTATTAACCAGAAATGTCATGTGAAAAATAAGGACATTAGGAAATTCCTGGATGGAATTTATGTGAGCGAGAAGAGCACCATTTTGGTGGATGAGTAG 582 0.4845 MKTILSSEIMNILDGVSIKVHAKVIEVEGPRGSLVRDFKHLNLDFDLITDDNGKRKLKIDAWFGSRKISAVIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNNNKSIEIQNSLGEKKVRKVDMLEGVSILRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKSTILVDE 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00420 193 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 Pfam Ribosomal protein L6 15 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 Gene3D - 90 193 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00420 193 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 1 192 - -
Cca03g00420 193 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Cca03g00420 193 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00420 Cca-Chr3 6511993 6512755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00420 1 193 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 81.443 8.67e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00420 K02940 - gmx:100306058 343.584