Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00419 ATGAACATCCCAGACGGCGTCAGCATCAAGGTTCACGCCAAGGTCATTCATGTCAAGAGGAAGCTCAAGATCGACGCCTGGTTTGGCTCCCGGAAAACCTCCGCAGCCATCTGCACCGCCCTCAGCGATGTTGAGAATCGCGTCACCAAGGACTACCACTACAAGATGAGGATCGTCTACGCTCACTTTCCCATCAATGCTAGCATTACCAACAACAACAAGGCCATTGAGATACGAAACTTCCTCTACAAGAAAAATGTTTTTTTTTAA 270 0.4815 MNIPDGVSIKVHAKVIHVKRKLKIDAWFGSRKTSAAICTALSDVENRVTKDYHYKMRIVYAHFPINASITNNNKAIEIRNFLYKKNVFF 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00419 89 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 19 87 - -
Cca03g00419 89 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 19 87 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00419 89 Gene3D - 52 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00419 89 SUPERFAMILY Ribosomal protein L6 52 86 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00419 Cca-Chr3 6476944 6477286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00419 1 87 Cytoplasmic Ribosomal Protein Gene Family AT4G10450 54.701 2.81e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00419 K02940 - gmx:100306058 125.176