Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00418 ATGGAATCCAAACCCGGTCAAACAATCAAGCTCCTCTGCAGCTACGGCGGCAAGATACTCCCACGCGCCACCGACGGCGAGCTCCGTTACGTCGGCGGCCACACCAGAGTCCTCACCGTCCACCGTTCCGTTACCTTTTCTGAATTGATAGTGAAGCTCGGCGAGTTTTGTGGTTCGTCTGTGATCTTGAGGTGTCAGTTACCCGAGGGAGACTTGGAGACCTTGATCTCCGTCACCAACGACGAAGATCTCGCCAACGTCATCGAAGAATACGATCGCGCCTCGTCCAAGCTCGCGCATCCGTTGAAGATCCGCGCCGTTCTCTCGCCGCCGAAGTCGGTGAAGAAGGCTTCTCCTGCGCCGTCGTCGGCGTCGTCCAGCGCGAGTCACTCTCCGGCCAGATCGCCTCACACCTCTGCCGAATCGCTGCCGTACACGGTGGCGTACCGCATCGGCAGGGGCAAACCGGCGCCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCGCCGGCGCCGGTAGCGTATACTTTCCGGAACGGTTTCACAAAGGCTCGTTGCTACACGCAATTCCGTCCACAAAGTCGGATGCCGTTTCGCTAATCAAACAAATCATATTTTTGTGCAACTCCATAATATTAAGTGGTCAACAAAAAGGGACGGGGACATAG 759 0.4862 MESKPGQTIKLLCSYGGKILPRATDGELRYVGGHTRVLTVHRSVTFSELIVKLGEFCGSSVILRCQLPEGDLETLISVTNDEDLANVIEEYDRASSKLAHPLKIRAVLSPPKSVKKASPAPSSASSSASHSPARSPHTSAESLPYTVAYRIGRGKPAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGSVYFPERFHKGSLLHAIPSTKSDAVSLIKQIIFLCNSIILSGQQKGTGT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00418 252 SMART PB1_new 23 111 IPR000270 GO:0005515
Cca03g00418 252 PANTHER PB1 DOMAIN PROTEIN 4 163 - -
Cca03g00418 252 CDD PB1_UP2 12 108 - -
Cca03g00418 252 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Cca03g00418 252 PANTHER OS05G0427100 PROTEIN-RELATED 4 163 - -
Cca03g00418 252 SUPERFAMILY CAD & PB1 domains 25 117 - -
Cca03g00418 252 MobiDBLite consensus disorder prediction 113 139 - -
Cca03g00418 252 MobiDBLite consensus disorder prediction 116 139 - -
Cca03g00418 252 Gene3D - 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00418 Cca-Chr3 6460551 6461916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00418 1 93 MAP Kinase Kinase Kinase AT3G46920 44.086 1.27e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00418 - - gmx:100797123 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00418 03 6460551 6461916 Cca03g00418 03 6460551 6461916 ECH
Cca11g01796 11 42816503 42817489 Cca03g00418 03 6460551 6461916 PCT