Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00416 ATGTCACGCTCGTTTGATAGAATAGGTGTAGGCAAACAAATGTTGAAGGTTATTGCTAATCGTTTGCATAGGGTTTTCAATAAGAAAGAAGGAAGCTCAAAACCTGGGGATTCTTCAGAACGAACTACTTCATTATCTGATTATGAAGATAGTGTACAGGAAAATTCATCTCCCTGTAGTTTTGAAGAAGCCATTGCAATAATGGAGTCTGGAGATAACAAACCAGAAATGCCAGAAAATTTAGCTGGTGGTGTTCTAGTAGATGAGAATTATTTAGTCTCTTCAAATGACCTTAATGTGTTTCTTTTTGTACCGAATTCACAGTTTTGGAAAGATATGGCTGAACTGCAGGGAACAACAAATGTGCATGAGGGACCTTGGACATGGAAACATGGAGACATGTCATGTTTAACACGAGGTGTTACCTATACAAAGGCAGCTACAAAATTCATTAAAGCAGTTAATGCCATCGAGGAGCAAACCTACATTAGAGTGAGCAGAAAAGAGTTTGCTATACTTGTCAGTATAAGCACACCTGAGGTTCCATATGGTAATGCATTTAGGATTGAAATTCTTTATAAGATAATGCCAGGAAAGGTATCTTCTGGAGAGGAATCCTCACATATTATTGTGTCATGGGGCATTGTCTTCCTCCAGAGCACAATGATGAAAAGCATGATTGAAGGTAGGGTAAGGGAAGGATTGAAGGAGAATTTCAAACAATTCTCCAACCAACTTGCCCTGCATTTTAAGGTGCTAGATAAAGCAGATTTACCAGATAAGGAGCATTTGTTGGCTACTTTGCAAACAGAAGACCAGTGGAATTGGTGGCAGGCAATTGCGTACTTTTGGAATTTCACTGTGGTTTCCACCATTTTCATGTTTTTGTATGTGTTAGTGCATATTTTAAGGTGTGGTCCAAGTCTACCTCAGGGCTTGGAATTTATGGGGCTTGAATTACCAGATAGTTTTGGAGAACTCATTACAAGTGGAATTTTAGTCATCCAGTTTCAGCGTGTTTATGATATGGTGTCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGTGATGGATGGGTTCTTACTGTGGCTTTAATTCAGGGGGTTGATCTGGCTTCCTTGGACTTGGAGTCAGAAGAGTTGTCAGATCCCTATGTAGTGTTCACCTGTAATGGGCAAACAAGGTCTAGCTCTGTCAAGCTTCAAACGTCCAATCCTCAATGGAATGAGGTATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTCTAGATGTGGAAGTTTTTGATTTTGGTGGTCCATTTGACCAGGATGTTTTACTTGGACATGTTGAGATCAATTTTCTAAAGCACACATCAACAGAATTGGCAGACATGTGGCTCATGCTTGAAGGAAAGCTTGCTCAATCTTCTCAGTCAAAGTTGCGATTGAGAATTTTTTTGGACAACAACAAAGGTGTTGAAACAATCAAGGAATATTTGGAGAAGATGGAAAAGGAAGTGGGCAAAAAAGGTCGGTTGTTTCTTTCAGCAAGGATTCTGGGGTTTTATGCCAGTTTGCTTGGACATAAAACCAAATTCTTCTTCCTTTGGGAAGATATTGAAGAGATACAAGTGCTTCCTCCAACATTGGCCACATTAGGGAGCCCTACATTGGTCATAATTCTGCAAAGAGGTCGAGGGCTTGATGCAAGGCACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTGTTTCATTTAGTGCTGCCTCCAGAACAATAAAGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCAGAAAGAACAAATTACTGATGACCATGAAGATCAAGAAGGCCTTGTAATTCCAGAAGACTCTGCAACTATTTTAGAGGATGAAGAAAAAATGTCCAGAATTTTCTCTGCAGAACTTCCAATTAAGGTGAGATCAGTGATGGGAATTTTTGAGGGAGAAAATCTGGAGCATAAAATTATGCGGAGATCAGGATGTGTGAACTATGAAACTACATCATGGGAAAAAGTAAAGCCTGATGTCTTTGAAAGGCACGTTTCTTACCGATTCAATCGACAGGTGTCAGCTTTTGGTGGTGAAGTCACATGCACACAACAAAAGTTTTTGAATCCAAGCACCGGAGGTTGGACTGTGATTGAAGTTATGGCTCTTCACGGTGTTCCATTTGCTGATCACTTTCATATTCATTTTAAGTACGAAATTGGGAAATCGTCTCTTGGTGAATGTGCTTGCAAGTGTGATGCATACATTGGTATTACTTGGCTTAAGAGCACCAAGTTTCAGCAAAGGATAAACAGGAACATAACAGCCAAGTTTAAGCTTCGATTGAAGGAAATATTTGAACTGCTTCAGAAAGAGATTTTGTTAATGTCTCATAACTCAAATGGACAAGGTTAA 2457 0.3976 MSRSFDRIGVGKQMLKVIANRLHRVFNKKEGSSKPGDSSERTTSLSDYEDSVQENSSPCSFEEAIAIMESGDNKPEMPENLAGGVLVDENYLVSSNDLNVFLFVPNSQFWKDMAELQGTTNVHEGPWTWKHGDMSCLTRGVTYTKAATKFIKAVNAIEEQTYIRVSRKEFAILVSISTPEVPYGNAFRIEILYKIMPGKVSSGEESSHIIVSWGIVFLQSTMMKSMIEGRVREGLKENFKQFSNQLALHFKVLDKADLPDKEHLLATLQTEDQWNWWQAIAYFWNFTVVSTIFMFLYVLVHILRCGPSLPQGLEFMGLELPDSFGELITSGILVIQFQRVYDMVSHFVQARFQMGTDHGLKAHGDGWVLTVALIQGVDLASLDLESEELSDPYVVFTCNGQTRSSSVKLQTSNPQWNEVLEFDAMEEPPSVLDVEVFDFGGPFDQDVLLGHVEINFLKHTSTELADMWLMLEGKLAQSSQSKLRLRIFLDNNKGVETIKEYLEKMEKEVGKKGRLFLSARILGFYASLLGHKTKFFFLWEDIEEIQVLPPTLATLGSPTLVIILQRGRGLDARHGAKTQDEEGRLRFHFQSFVSFSAASRTIKALWRTRILNPYQKEQITDDHEDQEGLVIPEDSATILEDEEKMSRIFSAELPIKVRSVMGIFEGENLEHKIMRRSGCVNYETTSWEKVKPDVFERHVSYRFNRQVSAFGGEVTCTQQKFLNPSTGGWTVIEVMALHGVPFADHFHIHFKYEIGKSSLGECACKCDAYIGITWLKSTKFQQRINRNITAKFKLRLKEIFELLQKEILLMSHNSNGQG 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00416 818 Pfam VAD1 Analog of StAR-related lipid transfer domain 648 788 IPR031968 -
Cca03g00416 818 Pfam VAD1 Analog of StAR-related lipid transfer domain 86 234 IPR031968 -
Cca03g00416 818 PANTHER BNAA05G37250D PROTEIN 512 813 IPR044511 -
Cca03g00416 818 Pfam GRAM domain 505 580 IPR004182 -
Cca03g00416 818 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 512 813 - -
Cca03g00416 818 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 5 512 - -
Cca03g00416 818 ProSiteProfiles VASt domain profile. 82 254 IPR031968 -
Cca03g00416 818 MobiDBLite consensus disorder prediction 28 57 - -
Cca03g00416 818 ProSiteProfiles C2 domain profile. 348 469 IPR000008 -
Cca03g00416 818 Gene3D - 489 608 IPR011993 -
Cca03g00416 818 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 367 492 IPR035892 -
Cca03g00416 818 CDD C2 369 471 - -
Cca03g00416 818 Pfam C2 domain 368 469 IPR000008 -
Cca03g00416 818 MobiDBLite consensus disorder prediction 37 57 - -
Cca03g00416 818 SMART C2_3c 368 469 IPR000008 -
Cca03g00416 818 PANTHER BNAA05G37250D PROTEIN 5 512 IPR044511 -
Cca03g00416 818 Gene3D C2 domain 351 488 IPR035892 -
Cca03g00416 818 ProSiteProfiles VASt domain profile. 644 807 IPR031968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00416 Cca-Chr3 6438567 6443536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00416 368 465 C2H2 Transcription Factor Family AT4G21160 33.673 8.75e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00416 - - gmx:100811103 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00416 03 6438567 6443536 Cca03g00416 03 6438567 6443536 ECH