Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00411 ATGAGTGCTCCCATGGAGACGGAGCTCACAACCCACGAAAATGGCACTGCTAGTGCTTCCCAACACTCTCTTCCCGAGGACAAAGTACTTGTCCCTGTCGAGGTATCCCTAAAACCTTCAAGCACAGCTAGAATTCAAGATGTGCGTTCCGCCATTGAGAGGATGCTTGAGAAGAGGAGTTTGAGCTACATCGATGGGCCCATTCCGGTGCCTATTGATGACGCGTTTCTTGCAGACAACGTGCAAAGGATTTGCGTTTGTGGATGTGATACTGATGAAAGGATGCACAATGGTAATGTCCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAATGAGGAGGGACCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAATGAATGGATGCTTCCTGCAAAAGAGTTTGATGGCATGTGGGAAAGCCTAATATATGAGTCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGTGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCCCAGAAATTATCAATTCGATTCAATTCGAGATACCCACAGTCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGCAAATGGTTCTCCGAAAGTGGAAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTATTGATTGATGAAGTGGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCCGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTTTAACCACGTCCAACATAACTGCTGCTATAGATATTGCTTTTGTAGACCGAGCTGATATTAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATGCGTTCGGGGATCTTGACTAGTTTACAGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAGTGCAAAGGATAGGTTGAACGCTCCCGCTTTTCATGAGGGTGCTACATTAATGCAACTGTGCAAGCAACTACTTGAAACTGCCGAAGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCGTTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCGACCCTATTAAGTTCTTATGTACAATGGTAGAAACAGCTAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1347 0.4306 MSAPMETELTTHENGTASASQHSLPEDKVLVPVEVSLKPSSTARIQDVRSAIERMLEKRSLSYIDGPIPVPIDDAFLADNVQRICVCGCDTDERMHNGNVLLFWQVKPVVHVFQLNEEGPCEDISSDGQSSSFNEWMLPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQSQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRSGILTSLQDCKNVMLPNYASAKDRLNAPAFHEGATLMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCDPIKFLCTMVETAKRERSELPD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00411 448 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g00411 448 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 186 204 IPR001270 GO:0005524
Cca03g00411 448 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 300 314 IPR001270 GO:0005524
Cca03g00411 448 ProSitePatterns AAA-protein family signature. 304 323 IPR003960 GO:0005524|GO:0016887
Cca03g00411 448 Gene3D - 123 350 IPR027417 -
Cca03g00411 448 Pfam ATPase family associated with various cellular activities (AAA) 186 331 IPR003959 GO:0005524|GO:0016887
Cca03g00411 448 SMART AAA_5 182 334 IPR003593 -
Cca03g00411 448 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 21 445 IPR044539 -
Cca03g00411 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 416 IPR027417 -
Cca03g00411 448 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g00411 448 CDD AAA 184 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00411 Cca-Chr3 6386300 6391132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00411 186 359 Calmodulin-binding Proteins AT3G56690 30.114 2.13e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00411 K22399 - gmx:100795009 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00411 03 6386300 6391132 Cca03g00411 03 6386300 6391132 ECH