Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00409 ATGGCAGTTTCTTCAGCCACAGCCACAGCCTCTTCCAAActcatcctcttcccccatgcatcatcctcatcctcctcctcttccctcacccctttccgccccaccaccacccacaaactagcccctctctcctcctccttcctccacccctccaccgtcctccgccgcacccctgcctccacccccacccaccgccgccccctcaccgtccgcgccgcccgcggcAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGGAAGACGACGCTGACGGCCGCCCTCACGATGGCCCTGGCCGCCCTCGGCAACAGCGCCCCCAAAAAGTACGACGAGATCGACGCCGCCCCGGAGGAGCGGGCGCGCGGCATCACCATCAACACGGCGACCGTGGAGTACGAGACCGAGAACCGGCACTACGCCCACGTGGACTGCCCGGGGCACGCGGACTACGTGAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTGGTGGTCTCCGGCGCCGACGGGCCCATGCCGCAGACGAAGGAACACATCCTCTTGGCGAAGCAAGTCGGAGTCCCGAACATGGTGGTGTTCCTCAACAAACAAGACCAAGTGGACGACGAGGAGCTTCTCCAATTAGTCGAACTGGAAGTCCGCGAGCTTCTCTCCTCCTACGAATTCCCCGGCGACGACATCCCAATCGTCTCGGGGTCCGCGCTCTTAGCCCTCGAAGCCCTCATGGCAAACCCTAGCATCAAACGCGGCGATAACGAGTGGGTTGACAAAATCTACCAACTCATGGACGAAGTGGACAATTACATCCCTATCCCTCAGCGCCAAACCGATCTCCCCTTCCTCCTGGCCGTGGAGGACGTTTTCTCCATCACCGGGCGTGGCACCGTCGCCACGGGCCGCGTGGAGCGCGGCACGGTTAAAGTGGGCGAGACGGTGGACCTGGTAGGGCTGCGCGAGACGCGGAACACGACCGTGACGGGAGTGGAAATGTTCCAGAAGATTCTGGACGAAGCGATGGCTGGCGATAACGTGGGGCTTCTGCTTCGGGGGGTTCAGAAGGTGGATATTCAGCGAGGGATGGTGTTGGCGAAGCCTGGGACGATTACTCCCCACACCAAGTTCGTTGCCATTGTTTATGTTTTGAAGAAGGAGGAGGGTGGCAGGCACTCCCCCTTCTTCGCTGGGTATAGGCCTCAGTTTTATATGAGGACTACCGATGTGACCGGTAAGGTTACCTCTATCATGAATGATAAGGATGAGGAGTCCAAGATGGTCATGCCTGGTGACCGGGTCAAGATGGTGGTCCAGCTTATCGTCCCTGTCGCCTGTGAACAGGGGATGAGGTTTGCTATTAGAGAAGGAGGCAAGACTGTGGGTGCTGGTGTTATTCAGTCTATTATTGAGTGA 1443 0.5114 MAVSSATATASSKLILFPHASSSSSSSSLTPFRPTTTHKLAPLSSSFLHPSTVLRRTPASTPTHRRPLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPSIKRGDNEWVDKIYQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGVQKVDIQRGMVLAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVQLIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00409 480 SUPERFAMILY Translation proteins 286 382 IPR009000 -
Cca03g00409 480 CDD EFTU_II 292 378 IPR033720 -
Cca03g00409 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 379 479 IPR009001 -
Cca03g00409 480 TIGRFAM EF-Tu: translation elongation factor Tu 73 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cca03g00409 480 Gene3D Translation factors 419 479 - -
Cca03g00409 480 Pfam Elongation factor Tu C-terminal domain 379 478 IPR004160 -
Cca03g00409 480 CDD EFTU_III 381 475 - -
Cca03g00409 480 PANTHER ELONGATION FACTOR TU-RELATED 27 480 - -
Cca03g00409 480 Pfam Elongation factor Tu GTP binding domain 81 282 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 Gene3D - 73 284 IPR027417 -
Cca03g00409 480 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 PRINTS GTP-binding elongation factor signature 165 176 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 Gene3D Translation factors 287 415 - -
Cca03g00409 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 307 IPR027417 -
Cca03g00409 480 TIGRFAM small_GTP: small GTP-binding protein domain 84 216 IPR005225 GO:0005525
Cca03g00409 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 285 IPR000795 GO:0003924|GO:0005525
Cca03g00409 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Cca03g00409 480 Hamap Elongation factor Tu [tuf]. 72 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cca03g00409 480 PANTHER ELONGATION FACTOR TU 27 480 - -
Cca03g00409 480 Pfam Elongation factor Tu domain 2 306 374 IPR004161 GO:0005525
Cca03g00409 480 CDD EF_Tu 82 284 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00409 Cca-Chr3 6359716 6361158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00409 79 478 Eukaryotic Initiation Factors Gene Family AT5G60390 29.778 4.51e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00409 K02358 - gmx:100793431 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00409 03 6359716 6361158 Cca03g00409 03 6359716 6361158 ECH
Cca11g01789 11 42746190 42748527 Cca03g00409 03 6359716 6361158 PCT